View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446-Insertion-5 (Length: 642)
Name: NF4446-Insertion-5
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446-Insertion-5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 66 - 627
Target Start/End: Original strand, 34201022 - 34201578
Alignment:
| Q |
66 |
tgattgatatatgccctcacctgtgaagggnnnnnnnnnnnnnatgtatccatgacactttattctgaaataaggaatctgatgcatgtattgttacaag |
165 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34201022 |
tgattgatatatgccctcacctgtgaagggtttttagttttttatgtatccatgacactttattctgaaacaaggaatctgatgcatgtattgttacaag |
34201121 |
T |
|
| Q |
166 |
ctaagaagctgcatgcattcttgtttactagtttgtcagaagaaaggaaaaggaaagagtattctatttaactaaacatgggtgatataagatgcaaatc |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34201122 |
ctaagaagctgcatgcattcttgtttactagtttgccagaagaaaggaaaaggaaagaatattctatttaactaaacatgggtggtataagatgcaaatc |
34201221 |
T |
|
| Q |
266 |
ttctttactatatacttggtacattcattttatctttaagaggagatggccgaattcgatatataacatcatggtttatgtttgctgttttgtcaataag |
365 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201222 |
ttctttactatatacttggtacattcattttatttttaagaggagatggccgaattcgatatataacatcatggtttatgtttgctgttttgtcaataag |
34201321 |
T |
|
| Q |
366 |
ttgtaataacttgtagtgggggcatgccaaaatggctttgtggattttttgacaactaccatagccaattttttaatggatgccctccgccatggcggca |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201322 |
ttgtaataacttgtagtgggggcatgccaaaatggcttggaggattttttgacaactaccatagccaattttttaatggatgccctccgccatggcggca |
34201421 |
T |
|
| Q |
466 |
ccaccactgctgtgcttatatggttttatgcnnnnnnnggccatagccaaatttgtttttgtcttccaccatagacaacattgattctatgctttttaaa |
565 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201422 |
ccaccactgctgtgcttatatggttttatgctttttttggccatagccaaatttctttttgtcttccaccatagacaacattgattctatgctttttaaa |
34201521 |
T |
|
| Q |
566 |
tggttttaccttagtagaacagttttaggcatgtcttttgatcaaagaactcatattcatct |
627 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34201522 |
tggttttaccttagtagaacagttttaggcatgtct-----tcaaagaactcatattcatct |
34201578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 34200988 - 34201029
Alignment:
| Q |
7 |
aatgccatcaatgcgggtattatggttttatatttgattgat |
48 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34200988 |
aatgtcatcaatgcgggtattatggttttatatttgattgat |
34201029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 33 - 642
Target Start/End: Original strand, 24238832 - 24239441
Alignment:
| Q |
33 |
tttatatttgattgattaatttgctgtgctatctgattgatatatgccctcacctgtgaagggnnnnnnnnnnnnnatgtatccatgacactttattctg |
132 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24238832 |
tttatgtttgattgattaatttgttgtgctatctgatatacatatgccctcacctgtgaagagtttttagttttttatgtatccatgacactttattctg |
24238931 |
T |
|
| Q |
133 |
aaataaggaatctgatgcatgtattgttacaagctaagaagctgcatgcattcttgtttactagtttgtcagaagaaaggaaaaggaaagagtattctat |
232 |
Q |
| |
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||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
24238932 |
aaaaaaggaatttgatgcatgtattgttaaaagctaagaagctgcatgcattcttgtttactagttttccagaagaaaggaaaaggaaagaatattctat |
24239031 |
T |
|
| Q |
233 |
ttaactaaacatgggtgatataagatgcaaatcttctttactatatacttggtacattcattttatctttaagaggagatggccgaattcgatatataac |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
24239032 |
ttaactaaacatgggtgatataagatgcaaatcttctttactatatacttggtacattcattttatttttaagagaagatggccgaattcgatatataac |
24239131 |
T |
|
| Q |
333 |
atcatggtttatgtttgctgttttgtcaataagttgtaataacttgtagtgggggcatgccaaaatggctttgtggattttttgacaactaccatagcca |
432 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| || |||||||||| ||||| |||||||| |
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|
| T |
24239132 |
atcatggtttatgtttcctgttttgtcaataagttgtaataatttgtaatgggggtatgccaaaatggcttggtagattttttgaaaactatcatagcca |
24239231 |
T |
|
| Q |
433 |
attttttaatggatgccctccgccatggcggcaccaccactgctgtgcttatatggttttatgcnnnnnnnggccatagccaaatttgtttttgtcttcc |
532 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
24239232 |
attttttaatggatgccctccgccatggcggcaccaccactgttgtgctgatatggttttatgctttttttggccatagccaaatttctttttgtcttcc |
24239331 |
T |
|
| Q |
533 |
accatagacaacattgattctatgctttttaaatggttttaccttagtagaacagttttaggcatgtcttttgatcaaagaactcatattcatctcctac |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24239332 |
accatagacaacattgattctatgctttttaaatggttttaccttagtagaacagttttaggcatgtcttttgatcaaagaactcatattcatctcctcc |
24239431 |
T |
|
| Q |
633 |
gtagttaatg |
642 |
Q |
| |
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||||||||| |
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| T |
24239432 |
atagttaatg |
24239441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 32810677 - 32810400
Alignment:
| Q |
7 |
aatgccatcaatgcgggtattatggttttatatttgattgattaatttgctgtgctatctgattgatatatgccctcacctgtgaagggnnnnnnnnnnn |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |
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| T |
32810677 |
aatgccatcaatgcgggtattatggttttatatttgattgattaatttgatgtgctatctgatatatatatgccctcacctgtgaagagtttttagtttt |
32810578 |
T |
|
| Q |
107 |
nnatgtatccatgacactttattctgaaataaggaat-ctgatgcatgtattgttacaagctaagaagctgcatgcattcttgtttactagtttgtcaga |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
32810577 |
ttatgtatccatgacactttattctgaaacaaggaattctgatgcatgttttgttacaagctaagaagttgcatgcattcttgtttactagtttaccaga |
32810478 |
T |
|
| Q |
206 |
agaaaggaaaaggaaagagtattctatttaactaaacatgggtgatataagatgcaaatcttctttactatatacttg |
283 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32810477 |
agaaaggaaaaggaaagaatatgctatttaactaaacatgggtgatataagatgcaaatcttctttactatatacttg |
32810400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 109 - 380
Target Start/End: Complemental strand, 11494651 - 11494380
Alignment:
| Q |
109 |
atgtatccatgacactttattctgaaataaggaatctgatgcatgtattgttacaagctaagaagctgcatgcattcttgtttactagtttgtcagaaga |
208 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
11494651 |
atgtatccatgacactttattctaaaacaaggaatctgatacatgtattgttacaagctaagaagctgcatgcattcttatttactagtttgccagaaga |
11494552 |
T |
|
| Q |
209 |
aaggaaaaggaaagagtattctatttaactaaacatgggtgatataagatgcaaatcttctttactatatacttggtacattcattttatctttaagagg |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
11494551 |
aaggaaaaggaaagaatattctatttaactaaacatgggtgatataagatgcaaatcttctttactatatatttggtacattcattttatttttaagagg |
11494452 |
T |
|
| Q |
309 |
agatggccgaattcgatatataacatcatggtttatgtttgctgttttgtcaataagttgtaataacttgta |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
11494451 |
agatggccgaattcgatatataacatcatggtttatgtttgttgttttgtcaataagttgtaatgacttgta |
11494380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 11494785 - 11494723
Alignment:
| Q |
7 |
aatgccatcaatgcgggtattatggttttatatttgattgattaatttgctgtgctatctgat |
69 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11494785 |
aatgccaccaatgcgggtattatggttttatatttgattgattaatttgctgtgctatctgat |
11494723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 11494374 - 11494324
Alignment:
| Q |
592 |
aggcatgtcttttgatcaaagaactcatattcatctcctacgtagttaatg |
642 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
11494374 |
aggcatgtcttttgatcaaagaactcatattcatctcctccatagttaatg |
11494324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 19886136 - 19886418
Alignment:
| Q |
7 |
aatgccatcaatgcgggtattatggttttatatttgattgattaatttgctgtgctatctgattgatatatgccctcacctgtgaagggnnnnnnnnnnn |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |
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| T |
19886136 |
aatgccatcaatgcgggtattatggttttatatttgattgattaatttgttgtgctatctgatatatatatgccctcacctgtgaagagtttttagtttt |
19886235 |
T |
|
| Q |
107 |
nnatgtatccatgacactttattctgaaataaggaat-ctgatgcatgtattgttacaagctaagaagctgcatgcattcttgtttactagtttgtcaga |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
19886236 |
ttatgtatccatgacactttattctgaaacaaggaattctgatgcatgttttgttacaagctaagaagttgcatgcattcttgtttactagttttccaga |
19886335 |
T |
|
| Q |
206 |
agaaaggaaaaggaaagagtattctatttaactaaacatgggtgatataagatgcaaatcttctttactatatacttggtaca |
288 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19886336 |
agaaaggaaaaggaaagaatatgctatttaactaaacatgggtgatataagatgcaaatcttctttactatatacttggtaca |
19886418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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