View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4446-Insertion-8 (Length: 285)

Name: NF4446-Insertion-8
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4446-Insertion-8
NF4446-Insertion-8
[»] chr4 (6 HSPs)
chr4 (7-285)||(23631760-23632038)
chr4 (7-280)||(18900219-18900505)
chr4 (207-280)||(9397555-9397628)
chr4 (207-280)||(26468907-26468980)
chr4 (137-207)||(24859774-24859845)
chr4 (221-280)||(6585797-6585856)
[»] chr1 (4 HSPs)
chr1 (6-184)||(27316179-27316358)
chr1 (126-192)||(14603213-14603279)
chr1 (202-280)||(27316391-27316468)
chr1 (203-280)||(14603305-14603382)
[»] chr5 (2 HSPs)
chr5 (204-276)||(18785687-18785759)
chr5 (77-199)||(18785777-18785901)
[»] chr2 (3 HSPs)
chr2 (203-280)||(17840184-17840261)
chr2 (151-184)||(13493756-13493789)
chr2 (7-42)||(17839975-17840010)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 23632038 - 23631760
Alignment:
Q  7 aaaaatgataatgaggatcatgaatcaaagtctattcagaattacatgcaataaaaggattgactaaatgaaaagacgcatttgatgcgaaactaaaatt 106  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23632038 aaaaatgataataaggatcatgaatcaaagtctattcaggattacatgcaataaaaggattgactaaatgaaaagacgcatttgatgcgaaactaaaatt 23631939  T
Q  107 gatttactgagcgaatggcttttgaaccaatagtccatgcatatgaagatgtgaaaataaaatgagaatcatgaattacttatataaactttggtttatt 206  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23631938 gatttacaaagcgaatggtttttgaaccaatagtccatgcatatgaagatgtgaaaataaaatgagaatcatgaattacttatataaactttggtttatt 23631839  T
Q  207 ggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatttagac 285  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23631838 ggtgaaaatttactattaattttgaagagaagtattcaccggaagtgaattcgagtacattatcatacttgatttagac 23631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 18900505 - 18900219
Alignment:
Q  7 aaaaatgataatgaggatcatgaatcaaagtctattcagaattacatg--caataaaaggattgactaaatgaaaagacgcatttgatgcgaaactaaaa 104  Q
    |||||||| || |||||||||||||| | ||||||| || |||| ||   ||||| || |||||| |||||||||||| ||||||||||||||| |||      
T  18900505 aaaaatgacaacgaggatcatgaatctatgtctattaaggattatatatacaatacaatgattgattaaatgaaaagatgcatttgatgcgaaattaatc 18900406  T
Q  105 ttgatttactgagcgaatggcttttgaaccaatagtccatgcatatgaagatgtgaaaataaaatgagaatcatgaattacttatataaactttggtt-- 202  Q
    |   |||    || ||||   ||||| |||| |||||||||||||||||||||  |||||||||||||||| || || || ||||||| | ||||| |      
T  18900405 taacttttaaaagggaataatttttggaccagtagtccatgcatatgaagatgcaaaaataaaatgagaatgataaaatatttatatacagtttggctta 18900306  T
Q  203 -----------tattggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
               ||||||| ||||||||||||||||||   |||||   ||||||| |||||||||| ||||| ||||||||||||||||    
T  18900305 atattcaagagtattggtaaaaatttactattaattt--cagagagacattcaccagaagtgaattagagtatattatcatacttgatt 18900219  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 9397555 - 9397628
Alignment:
Q  207 ggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    ||||||||| ||||||||| |||||||| | |||||||||  |||||||||| || ||||||||||||||||||    
T  9397555 ggtgaaaatctactattaaatttgaagatacgtattcacctaaagtgaattcaagcacattatcatacttgatt 9397628  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 26468980 - 26468907
Alignment:
Q  207 ggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    ||||||||| |||||||||||||||||||| ||||||| | |||||| |||  | |||||||||||||||||||    
T  26468980 ggtgaaaatctactattaattttgaagagacgtattcatctgaagtggatttaattacattatcatacttgatt 26468907  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 24859845 - 24859774
Alignment:
Q  137 tagtccatgcatatgaagatgtga-aaataaaatgagaatcatgaattacttatataaactttggtttattg 207  Q
    |||||||||| ||||||||||  | ||||||||||||||||||||| || ||||||||| ||||| ||||||    
T  24859845 tagtccatgcttatgaagatgcaagaaataaaatgagaatcatgaaatatttatataaagtttggcttattg 24859774  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 6585856 - 6585797
Alignment:
Q  221 attaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    |||||||||||||||  | ||||||  ||||||||||| ||| |||||||||||||||||    
T  6585856 attaattttgaagaggcggattcacttgaagtgaattcaagtgcattatcatacttgatt 6585797  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 27316179 - 27316358
Alignment:
Q  6 caaaaatgataatgaggatcatgaatcaaagtctattcagaattacatgcaataaaaggattgactaaatgaaaagacgcatttgatgcgaaactaaaat 105  Q
    |||||| ||||| |||||||||||||||||||||||  || |||| |  |  ||||| |||||| |||||  ||||| | ||||||||||||| |||| |    
T  27316179 caaaaaagataacgaggatcatgaatcaaagtctatgaaggattatagacggtaaaatgattgagtaaattgaaagatgaatttgatgcgaaattaaact 27316278  T
Q  106 tgatttactgagcgaa-tggcttttgaaccaatagtccatgcatatgaagatgtgaaaataaaatgagaatcatgaatta 184  Q
       ||| |  || ||| ||| ||||| |||| |||||||| |||||||| || |||||||||||||||||||||||||||    
T  27316279 aattttgcaaagagaaatggtttttggaccagtagtccatacatatgaatatatgaaaataaaatgagaatcatgaatta 27316358  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 14603213 - 14603279
Alignment:
Q  126 ttttgaaccaatagtccatgcatatgaagatgtgaaaataaaatgagaatcatgaattacttatata 192  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||| ||||| |||||||| |||||||    
T  14603213 ttttggaccaatagtccatgcatctgaatatgtaaaaataaaataagaattatgaattatttatata 14603279  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 27316391 - 27316468
Alignment:
Q  202 ttattggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    |||||||| |||| | |||||||| ||||||||||  |||| ||| ||||||||||  |||||||||||||||||||||    
T  27316391 ttattggtaaaaact-actattaaatttgaagagacatatttacctgaagtgaattaaagtacattatcatacttgatt 27316468  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 14603305 - 14603382
Alignment:
Q  203 tattggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    ||||||||||||  ||| |||||||| |||| |  ||||||||| ||||||||||| |||||||||| |||| |||||    
T  14603305 tattggtgaaaacctacaattaatttcgaaggggcgtattcacctgaagtgaattcaagtacattattatacctgatt 14603382  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 18785759 - 18785687
Alignment:
Q  204 attggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatactt 276  Q
    |||||||||||||||||||||||||||||||||  ||| |||| ||||| || | ||||||||||||||||||    
T  18785759 attggtgaaaatttactattaattttgaagagacatatacaccagaagttaactagagtacattatcatactt 18785687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 18785901 - 18785777
Alignment:
Q  77 aaaagacgcatttgatgcgaaactaaaattgatttactgagcgaatggcttttgaaccaatagtccatgcatatgaagatg--tgaaaataaaatgagaa 174  Q
    ||||||| ||||||||| |||| |||| | | ||| |  | ||||||| ||||| |||||||  |||||||||||||||||    |||||||||||| ||    
T  18785901 aaaagacacatttgatgtgaaattaaactagctttgcaaaacgaatggtttttgtaccaataacccatgcatatgaagatgcaaaaaaataaaatgataa 18785802  T
Q  175 tcatgaattacttatataaactttg 199  Q
    |||| || || ||||||||| ||||    
T  18785801 tcataaaatatttatataaagtttg 18785777  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 17840184 - 17840261
Alignment:
Q  203 tattggtgaaaatttactattaattttgaagagaagtattcacccgaagtgaattcgagtacattatcatacttgatt 280  Q
    |||||||||||   ||||||||||||||||||||  |||||||| ||||||||||| | |||| ||| ||||||||||    
T  17840184 tattggtgaaatcctactattaattttgaagagacatattcaccggaagtgaattcaaatacaatatgatacttgatt 17840261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 13493756 - 13493789
Alignment:
Q  151 gaagatgtgaaaataaaatgagaatcatgaatta 184  Q
    ||||||||||||||||||||||||||||||||||    
T  13493756 gaagatgtgaaaataaaatgagaatcatgaatta 13493789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 17839975 - 17840010
Alignment:
Q  7 aaaaatgataatgaggatcatgaatcaaagtctatt 42  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17839975 aaaaatgataatgagaatcatgaatcaaagtctatt 17840010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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