View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446-Insertion-9 (Length: 171)
Name: NF4446-Insertion-9
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446-Insertion-9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 3e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 13587201 - 13587365
Alignment:
| Q |
4 |
aacacaatttcgataaaaggttattgtataacgaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaa |
103 |
Q |
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| T |
13587201 |
aacacaattacgataaaaggtt---gtataacgaaattattgaccgaggactagaaccaggtaatgtaacatacactgctctagttcctggcttgttaaa |
13587297 |
T |
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| Q |
104 |
cagtaggcacacagagaaatcaataatattgtataatgaaatatcttccaatggaatgaaaccagcat |
171 |
Q |
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| T |
13587298 |
cagtgggcacacggagaaatcaataatattgtataatgaaatatcttccaatgaaatgataccagcat |
13587365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 267142 - 267274
Alignment:
| Q |
36 |
gaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtaggcacacagagaaatcaataata-ttg |
134 |
Q |
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| T |
267142 |
gaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttg |
267241 |
T |
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| Q |
135 |
tataatgaaatatcttccaatggaatgaaacca |
167 |
Q |
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| T |
267242 |
tacaatgaaatgtcttccaagggaatgaaacca |
267274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 6783362 - 6783236
Alignment:
| Q |
36 |
gaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtaggcacacagagaaatcaataatattgt |
135 |
Q |
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| T |
6783362 |
gaaattattgaccaaggactaaaaccagatagagtaacatacactgctctaatttggggcttgttaaacggaaggcaaaaggagatagcaattatatact |
6783263 |
T |
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| Q |
136 |
ataatgaaatatcttccaatggaatga |
162 |
Q |
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| T |
6783262 |
atgatgaaatgtcttccaagggaatga |
6783236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 51283741 - 51283868
Alignment:
| Q |
40 |
ttattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtaggcacacagagaaatcaataatattgtataa |
139 |
Q |
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| T |
51283741 |
ttattaacagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggcacccagagatagaagttacattgtataa |
51283840 |
T |
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| Q |
140 |
tgaaatatcttccaatggaatgaaacca |
167 |
Q |
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| T |
51283841 |
tgaaatgtcttccaagggaatgacacca |
51283868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 41627994 - 41628112
Alignment:
| Q |
49 |
gaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtaggcacacagagaaatcaataatattgtataatgaaatatc |
148 |
Q |
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| T |
41627994 |
gaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggaactcagagatagcagttacattgtataatgaaatgtc |
41628093 |
T |
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| Q |
149 |
ttccaatggaatgaaacca |
167 |
Q |
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| T |
41628094 |
ttccaagggaatgacacca |
41628112 |
T |
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