View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446_low_1 (Length: 687)
Name: NF4446_low_1
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 182 - 661
Target Start/End: Original strand, 6803857 - 6804337
Alignment:
| Q |
182 |
tcattcataactttaaaaacatctaaaacaaataaaccattactataaaaacctttgcctacaaaaccccctcattttgaaagtagaactttgtctgaat |
281 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
6803857 |
tcattcataactttagaaacatctaaaataaataaaccattactatagaaacctttgcctacaaagcccccacattttgaaagtagaactttgcctgaat |
6803956 |
T |
|
| Q |
282 |
caaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803957 |
caaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttt |
6804056 |
T |
|
| Q |
382 |
tcctgaagtgagtttcaagttcacctttcctttaccaagaacagtggctgttc-tgaatcactcaaaattatattttcctctccttcccctatatattta |
480 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
6804057 |
tcctgaagtgagtttcaagttcacctttcctttaccaagaacagtggctgttcttgaatcactgaaaagtacattttcctctccttcccctatatattta |
6804156 |
T |
|
| Q |
481 |
taggaggtgaacatatttttatttgcgcatatatgtgcggtgaccccagaatctaccacccatgatttttcctttataagaattatagtttcagaaacaa |
580 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
6804157 |
taggaggtgaacatatttttatttgcacatatatgtgcggtgaccccagaatctaccacccatgagttttcctttataagaattatagattcagaaacaa |
6804256 |
T |
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| Q |
581 |
cattcacaaatatatcatccatcaaagctaaattaaatttatgatttacatgttacttgtttccaatacttcatctctagt |
661 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||| ||||||||| |||| ||||| |||| |
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| T |
6804257 |
cattcacaaatatataatccatcaaagctaaattaaatttaggattgacaggttggttgtttccattactgcatctatagt |
6804337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 6803630 - 6803727
Alignment:
| Q |
89 |
gaatgaattaaacctaaaagttcgatttcacgaaactctataggtttacaagacttctttgtacttttagcttctacacatattggacacttatcatt |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
6803630 |
gaatgaattaaacctaaaagttcggtttcacgaaactctataggtttacaagacttctttgtaattttagcttctacacatattgaacacttatcatt |
6803727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 209 - 365
Target Start/End: Complemental strand, 14060055 - 14059899
Alignment:
| Q |
209 |
acaaataaaccattactataaaaacctttgcctacaaaaccccctcattttgaaagtagaactttgtctgaatcaaaattagtttttatgcccgctttgc |
308 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||| ||| |||||| | | ||| |||||||||| |
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| T |
14060055 |
acaaatacaccattactataaaatcctttgcctacaaagcccccacattttgaaagtaaaactttgtttgattcaaaagtgactgttacacccgctttgc |
14059956 |
T |
|
| Q |
309 |
tcaatatagatacagacactaaattataattcatatcaggaacatggagaacattac |
365 |
Q |
| |
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|||||||||| |||||||| ||||||||| |||||| ||| ||||| | |||||||| |
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| T |
14059955 |
tcaatatagacacagacaccaaattataactcatatgaggcacatgtaaaacattac |
14059899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 517
Target Start/End: Complemental strand, 14059839 - 14059728
Alignment:
| Q |
407 |
tttcctttaccaagaacagtggctgttct-gaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttg |
505 |
Q |
| |
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|||||| ||||||||||| ||||||| |||||||| ||||| |||| ||||| ||||| | ||||| |||||| || ||||||||||||||||||| |
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| T |
14059839 |
tttcctataccaagaacatcaactgttctcgaatcacttaaaatgatatgttcctttcctttcgctatagttttataagatgtgaacatatttttatttg |
14059740 |
T |
|
| Q |
506 |
cgcatatatgtg |
517 |
Q |
| |
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| || ||||||| |
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| T |
14059739 |
cacaaatatgtg |
14059728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 209 - 599
Target Start/End: Original strand, 26972569 - 26972956
Alignment:
| Q |
209 |
acaaataaaccattactataaaaacctttgcctacaaaaccccctcattttgaaagtagaactttgtctgaatcaaaattagtttttatgcccgctttgc |
308 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||| ||| |||||| | | ||| |||||||||| |
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| T |
26972569 |
acaaataaatcgttactataaaatcctttgcctacaaagcccccacattttgaaagtaaaactttgtttgattcaaaagtgactgttacacccgctttgc |
26972668 |
T |
|
| Q |
309 |
tcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaagttcacctt |
408 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| |||||| ||| |||| | |||||||||||| || | | ||||||| || | ||||| || | ||| || |
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| T |
26972669 |
tcaatatagacacatacaccaaattataactcatatgaggcacatataaaacattacttaaagatatggtttttccagaggcaagttttaaatccacttt |
26972768 |
T |
|
| Q |
409 |
tcctttaccaagaacagtggctgtt-ctgaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttgcg |
507 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||||| ||||| |||| ||||| ||||| | | |||||||| || |||||||||||||||||||| |
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|
| T |
26972769 |
tcctataccaagaacatcaactgttcccgaatcacttaaaatgatatgttcctttcctttcgc----tatttataagatgtgaacatatttttatttgca |
26972864 |
T |
|
| Q |
508 |
catatatgtgcggtgaccccagaatctaccacccatgatttttcctttataagaattatagtttcagaaacaacattcacaaatatatcatc |
599 |
Q |
| |
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|| ||||||| ||| || || |||| |||||||| ||||||||| || || ||| || | ||||| |||||||||| ||||||||| |
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| T |
26972865 |
caaatatgtgaggtagagcctgagtctagcacccatggtttttccttcattgaaagtattgtatgagaaataacattcacatgtatatcatc |
26972956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 245 - 517
Target Start/End: Original strand, 53730464 - 53730737
Alignment:
| Q |
245 |
aaaccccctcattttgaaagtagaactttgtctgaatcaaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcatat |
344 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||| |||||| | | ||| ||| |||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
53730464 |
aaacccccacattttgaaagtaagactttgtttgattcaaaagtgactgttacacccactttgctcaatatagacacagacaccaaattataactcatat |
53730563 |
T |
|
| Q |
345 |
caggaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaagttcacctttcctttaccaagaacagtggctgttct-gaatcact |
443 |
Q |
| |
|
||| |||| | |||||||||||| || | | |||||| |||| |||| || | ||| ||| || ||||||||||| |||||| ||||||| |
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|
| T |
53730564 |
gaggcacatataaaacattacttaaagaaatggtttttctagaagcaggttttaaatccactttttctataccaagaacatcaattgttctcaaatcact |
53730663 |
T |
|
| Q |
444 |
caaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttgcgcatatatgtg |
517 |
Q |
| |
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||||| |||| |||| ||||| ||||||| |||||| || |||||||||||||||||||| || ||||||| |
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|
| T |
53730664 |
taaaatgatatgctcctttcctttccctatagttttataagatgtgaacatatttttatttgcacaaatatgtg |
53730737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 598
Target Start/End: Original strand, 21418264 - 21418426
Alignment:
| Q |
436 |
gaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttgcgcatatatgtgcggtgaccccagaatcta |
535 |
Q |
| |
|
|||||||| ||||| |||| ||||| || || ||||||| |||||| || |||||||||||||||||||| || || |||| ||| | || |||| |
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| T |
21418264 |
gaatcacttaaaatgatatgttcctttcttttccctatagttttataagatgtgaacatatttttatttgcacaaatttgtgaggtagaggctgagtcta |
21418363 |
T |
|
| Q |
536 |
ccacccatgatttttcctttataagaattatagtttcagaaacaacattcacaaatatatcat |
598 |
Q |
| |
|
||||||||| ||||||||| || || ||| || | |||||||||||||||| |||||||| |
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|
| T |
21418364 |
ccacccatggtttttccttcattgaaagtattgtatgagaaacaacattcacatgtatatcat |
21418426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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