View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446_low_2 (Length: 554)
Name: NF4446_low_2
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 40658254 - 40658664
Alignment:
| Q |
20 |
aagataatgacagatctataaaaggttttctataaactcacgacacagctccacgtccttgctgtcgcgacgtaccaagataagaaataatggctgggta |
119 |
Q |
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| T |
40658254 |
aagataataacagatctataaaaggttttctataaactcacgacacagctccacgtccttgctgtcgcgacgtaccaagataagaaataatggctgagta |
40658353 |
T |
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| Q |
120 |
atgtaccattgcagctagtccttttctccatcccaatccaatcatagtgatggcaacgttgtaattgagaaggtccaggacaatatagtttctaatcacc |
219 |
Q |
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| T |
40658354 |
atgtaccattgcagctagtccttttctccatcccaatccaatcatagtgatggcaacgttgttattgagaaggtccaggacaatatagtttctaatcacc |
40658453 |
T |
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| Q |
220 |
agcaccttaaaa--ataatttggcactgttggttaggaa-------tgggaacaacatttattaaccaacaatcggagccatttgttgcatcactggcta |
310 |
Q |
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| T |
40658454 |
agcaccttaaaaatataatttggcactgttggttaggaatgggaattgggaacaacatttattaaccaacaatcggagccatttgttgcatcaccggcta |
40658553 |
T |
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| Q |
311 |
ataatacttatttcttacttgcgttatgagtccaccaaagcctaggacttagggccggttcaaggaccaagcatcccaaacnnnnnnnttgctctttaag |
410 |
Q |
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| T |
40658554 |
atactatttcttactt-ctcgcgttatgattccaccaaagcctaggacttagggccggttcaaggaccaagcatcccaaacaaaaaaattgctctttaag |
40658652 |
T |
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| Q |
411 |
attgcttactat |
422 |
Q |
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| T |
40658653 |
attgcttactat |
40658664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 472 - 546
Target Start/End: Original strand, 40658664 - 40658738
Alignment:
| Q |
472 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcaaccctttcatctc |
546 |
Q |
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| T |
40658664 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcagccctttcatctc |
40658738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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