View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446_low_3 (Length: 408)
Name: NF4446_low_3
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 31310578 - 31310959
Alignment:
| Q |
17 |
atgaaccaaatggcaatgagagaaagaaagaaaaactgagaggaagtgttcatcttagaattattaacaaggaaaagataagtttagatatatcaatatt |
116 |
Q |
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| T |
31310578 |
atgaaccaaatggcaatgagagaaagaaagaaaaactgagaggaagtgttcatcttagaattattaacaaggaaaagataagtttagatatatcaatatt |
31310677 |
T |
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| Q |
117 |
tttgaaggaagagagtctaatatatattgtgtatgttgaattttcagaagcaagaacaagtccacaatgcaagtaaacgcgtgtatcattgtaaataaac |
216 |
Q |
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| T |
31310678 |
tttgaaggaagagattctaatatatattgtgtatgttgaattttcagaaacaagaacaagtcaacaatgcaagtaaacgcgtgtatcattgtaaataaac |
31310777 |
T |
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| Q |
217 |
aatttggcctctgtgtgaataaattcttacttaagcacttatagcataagcacaatcatgtaagtaattatgtataagttttttgcacaataaagtaaac |
316 |
Q |
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| T |
31310778 |
aatttggcctctgtgtgaataaattcttacttaagcacttatagcataagcacaatcatgtaagtaattatgtataagttttttgcacaataaagtaaac |
31310877 |
T |
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| Q |
317 |
aaaattcatataagctatccataagttgagtttataaactctcccaaactgtttgacaagtgtttatagaaaagtaaataagct |
400 |
Q |
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| T |
31310878 |
aaaattcatataagctatccataagttgagtttataaactctcccaaactgtttgacaagtgtttatag--aagtaaataagct |
31310959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 31376989 - 31377084
Alignment:
| Q |
17 |
atgaaccaaatggcaatgagagaaagaaagaaaaactgagaggaagtgttcatcttagaattattaacaaggaaaagata-agtttagatatatcaata |
114 |
Q |
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| T |
31376989 |
atgaaccaaatgagaatgagggaaaggaagaaaaaatgagaggaagtattcatcttaaaactat---caaggaaaagagagagttcagatatatcaata |
31377084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 31416179 - 31416123
Alignment:
| Q |
17 |
atgaaccaaatggcaatgagagaaagaaagaaaaactgagaggaagtgttcatctta |
73 |
Q |
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||||||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||| |
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| T |
31416179 |
atgaaccaaatggaaatgagtgaaaggaagagaaattgagaggaagtgttcatctta |
31416123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31283903 - 31283991
Alignment:
| Q |
21 |
accaaatggcaatgagagaaagaaagaaaaactgagaggaagtgttcatcttagaattattaacaaggaaaagataagtttagatatatcaa |
112 |
Q |
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| T |
31283903 |
accaaataacaatgagtgaaaggaagagaaattgagatgaagtgttcatctt---aatattaacaaggaaagcaaaagtttagatatatcaa |
31283991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 31362944 - 31362990
Alignment:
| Q |
68 |
atcttagaattattaacaaggaaaagataagtttagatatatcaata |
114 |
Q |
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|||||| |||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
31362944 |
atcttaaaattattaacaaggaagagagaagttcagatatatcaata |
31362990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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