View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4446_low_4 (Length: 394)
Name: NF4446_low_4
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 42591484 - 42591863
Alignment:
| Q |
1 |
acagtaaagcatcacctaaactctaaactggtatatatacctggcactattacattaagatgact-aacaatcaatcaaatttaatacctgctagtccta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42591484 |
acagtaaagcatcacctaaactctaaactggtatatatacctggcactattacattaagatgacttaacagtcaatcaaatttaatacctgctagtccta |
42591583 |
T |
|
| Q |
100 |
aagggaacaaaagaagcatcataaatggaagcccgcagtaaaaatagaatgaaggttgtggggtagactctggagggtccaggggtgaagtatcagtgtt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42591584 |
aagggaacaaaagaagcatcataaatggaagcccgcaataaaaatagaataaaggttgtggggtagactctggagggtccaggggtgaagtatcagtgtt |
42591683 |
T |
|
| Q |
200 |
gctgnnnnnnnctgaaagaatcttattcaagatccattcaagtacccatgaaaaagcaccaaccatgacacagatggcccatctagtggcattcagccgc |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42591684 |
gctgaaaaaaactgaaagaatcttattcaagatccattcaagtacccatgaaaaagcaccaaccatgacacagatggcccatctagtggcattcagccgc |
42591783 |
T |
|
| Q |
300 |
atgcaatatgctaggccttttgcatactcaataaccactacctgcataacaaaacaactacctaaagccactgagaaaca |
379 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42591784 |
atgcaatatgccaggccttttgcatactcaataaccactacctgcataacaaaacaactacctaaagccactgagaaaca |
42591863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 377
Target Start/End: Complemental strand, 4093067 - 4092915
Alignment:
| Q |
225 |
ttcaagatccattcaagtacccatgaaaaagcaccaaccatgacacagatggcccatctagtggcattcagccgcatgcaatatgctaggccttttgcat |
324 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| | ||||| ||||| || | ||||| || | ||||| | | | ||||| ||||||||||||||||| |
|
|
| T |
4093067 |
ttcaagatccattcaaatacccatgaaagagcgctaaccagcacacatatagtccatccagcagtattcaacggtacgcaatctgctaggccttttgcat |
4092968 |
T |
|
| Q |
325 |
actcaataaccactacctgcataacaaaacaactacctaaagccactgagaaa |
377 |
Q |
| |
|
||| ||| |||| |||||||| |||| |||||| ||||||||||| |||||| |
|
|
| T |
4092967 |
actgaatcaccaaaacctgcattacaacacaactgcctaaagccaccgagaaa |
4092915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University