View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446_low_8 (Length: 202)
Name: NF4446_low_8
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 520050 - 519881
Alignment:
| Q |
10 |
gagatgaaagagaaaaatcaagggtagtttaggcatgcgaaatccacccnnnnnnncaacagaaaggaaaagtacctggaaatttaaatcaacaaagaca |
109 |
Q |
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| T |
520050 |
gagatgaaagagaaaaagcaagggtagtttaggcatgcgaaatccacccaaaaaaacaacagaaaggaaaagtacctggaaattcaaatcaacaaagaca |
519951 |
T |
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| Q |
110 |
ttacaaaagcgagtaatgtctttcatattattggtgttaatttcagcgagtaaattctctgcaaactctc |
179 |
Q |
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| T |
519950 |
ttacaaaagcgagtaatgtctttcatattattggtgttaatttcagcgagtaaattctccgcaaactctc |
519881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 366506 - 366675
Alignment:
| Q |
10 |
gagatgaaagagaaaaatcaagggtagtttaggcatgcgaaatccacccnnnnnnncaacagaaaggaaaagtacctggaaatttaaatcaacaaagaca |
109 |
Q |
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| T |
366506 |
gagatgaaagagaaaaagcaagggtggtttaggcatacaaaatccacccaaaaaaacaacagaaaggaaaagtacctggaaattcaaatcaacaaagaca |
366605 |
T |
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| Q |
110 |
ttacaaaagcgagtaatgtctttcatattattggtgttaatttcagcgagtaaattctctgcaaactctc |
179 |
Q |
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| T |
366606 |
ttacaaaagcgagtaatgtctttcatagtattggtgttaatttcaacgagtaaattctcagcaaactctc |
366675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 529698 - 529595
Alignment:
| Q |
74 |
aggaaaagtacctggaaatttaaatcaacaaagacattacaaaagcgagtaatgtctttcatattattggtgttaatttcagcgagtaaattctctgcaa |
173 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
529698 |
aggaaaagtacctggaaatccaaatcaacatagacattacaaaagcgggtaatgtcttccatattattggtgttaatttcagcgactaaattctcagcaa |
529599 |
T |
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| Q |
174 |
actc |
177 |
Q |
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|||| |
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| T |
529598 |
actc |
529595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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