View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4447-Insertion-1 (Length: 960)
Name: NF4447-Insertion-1
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Complemental strand, 27745494 - 27744949
Alignment:
| Q |
8 |
ataatagaccacaatgatcgtttgctacacgacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttca |
107 |
Q |
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| T |
27745494 |
ataatagaccacaatgatcgtttgctacacgacaagaaaggtatgaagaagaaaaaagaacgatatttt-taagtctccatgtttacacattactcttca |
27745396 |
T |
|
| Q |
108 |
gtgttaaagtaagcttggaacaccatgcaatacttacagaatgatacaatgattgcttaaaaggatgttcaacaatcttcaattctaaatgttggtaaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27745395 |
gtgttaaagtaagcttggaacaccatgcaatacttacagaatgatacaatgaatgcttaaaaggaagttcaacaatcttcaattctaaatgttggtaaga |
27745296 |
T |
|
| Q |
208 |
agcactatgaaactgataaaattattattattataaagttatgcttgaatattcaagctgaaatcaaatcgaagagctttatctatatgccattcaggcc |
307 |
Q |
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| T |
27745295 |
agcactatgaaactgataaaattattattattataaagttatgcttga---ttcaagctgaaatcaaattgaagagctttatctatatgccattcaggcc |
27745199 |
T |
|
| Q |
308 |
aatgtgtcacggaacaagtcagttttatggttattatatataccgcatcatgctcttctgataggcacgcatattctcattgatatcttcatcacttata |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745198 |
aatgtgtcacggcacaagtcagttttatggttattatatataccgcatcatgctcttctgataggcacgcatattctcattgatatcttcatcacttata |
27745099 |
T |
|
| Q |
408 |
tcattttcattgtgaaatagaacaggtccatgaatattctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattc |
507 |
Q |
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| T |
27745098 |
tcattttcattgtgaaatagaacaggtccatgaatattctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattc |
27744999 |
T |
|
| Q |
508 |
cattaggtgggacaaatgaattgaatactacatacaagtcaacagcctac |
557 |
Q |
| |
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| T |
27744998 |
cattaggtgggacaaatgaattgaatactacatacaagtcaacagcctac |
27744949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 586 - 953
Target Start/End: Complemental strand, 27744936 - 27744572
Alignment:
| Q |
586 |
aaaacatttttgacaaaatcaaatgtttcaactcttagcatttaaattnnnnnnnnnnnnnn-ttattatacgtttatgcacaccttcacatagttccag |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27744936 |
aaaacatttttgacaaaatcaaatgtttcaactcttagcatttaaattaaaaaaaagaaaaaattattatacgtttatgcacaccttcacatagttccag |
27744837 |
T |
|
| Q |
685 |
tccatgttgacaacagcaagcctataagtatctttctcaatcaccgataccttgtcttcctgatcctatttaataacaacaaaaacactaataacgaagg |
784 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27744836 |
tccatgttgacaacagcaagcctataagtatctttatcaatcaccgatacctcgtcttcctgatcctatttaataacaacaaaaacactaataacgaagg |
27744737 |
T |
|
| Q |
785 |
aagnnnnnnnnnnnttaaacatgtgcttggtccctgcaaatatctcagtttgggcataaaagtacctgcatatcaagtgtgtcagtatcttcatctgtgt |
884 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27744736 |
aa----aaaaaaatttaaacatgtgcttggtccctgcaagtatctcagtttgggcataaaagtacctgcatatcaagtgtgtcagtatcttcatctgtgt |
27744641 |
T |
|
| Q |
885 |
atgtatcttcttcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatca |
953 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27744640 |
atgtatcttcttcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatca |
27744572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 446 - 557
Target Start/End: Original strand, 38529391 - 38529502
Alignment:
| Q |
446 |
ctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattccattaggtgggacaaatgaattgaatactacatacaag |
545 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||| |||| ||| |||||||||| |||| ||| |||| | |||||| | |||| |||||||||| |
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| T |
38529391 |
ctcctcattcatacgttgaaggccaaactcggttggataaatagttaccgatttgatcagtccactagttggggctaatgaactaaataatacatacaag |
38529490 |
T |
|
| Q |
546 |
tcaacagcctac |
557 |
Q |
| |
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|||||||||||| |
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| T |
38529491 |
tcaacagcctac |
38529502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 49513833 - 49513670
Alignment:
| Q |
38 |
gacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttcagtgttaaagtaagcttggaacaccatgcaa |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||| || |||||||||||| | |||||||| ||||||| |
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| T |
49513833 |
gacaaaaaaggtaggaagaagaaaaaagaatgatgttgtcttattcaccatgtttacacattacttttgagtgttaaagtatgtttggaacatcatgcaa |
49513734 |
T |
|
| Q |
138 |
tacttacagaatgatacaatgattgcttaaaaggatgttcaacaatcttcaattctaaatgttg |
201 |
Q |
| |
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||||||||| ||||| ||||| | |||||| ||| ||| |||||| || ||||| |||||||| |
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| T |
49513733 |
tacttacagcttgatataatgaattcttaaagggaagtttaacaatattaaattccaaatgttg |
49513670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 664 - 771
Target Start/End: Complemental strand, 49513660 - 49513556
Alignment:
| Q |
664 |
cacaccttcacatagttccagtccatgttgacaacagcaagcctataagtatctttctcaatcaccgataccttgtcttcctgatcctatttaataacaa |
763 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||| ||||| || |||||||| ||||||| |
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| T |
49513660 |
cacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacc---tcttcgtgttcctattttataacaa |
49513564 |
T |
|
| Q |
764 |
caaaaaca |
771 |
Q |
| |
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||| |||| |
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|
| T |
49513563 |
caacaaca |
49513556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 896 - 937
Target Start/End: Complemental strand, 49513466 - 49513425
Alignment:
| Q |
896 |
tcttcgtctgtagtagaatttgattcattctctgctgcttta |
937 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
49513466 |
tcttcatctgtagtagaatttgattcattctctactccttta |
49513425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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