View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4447-Insertion-2 (Length: 831)
Name: NF4447-Insertion-2
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Original strand, 36127165 - 36127839
Alignment:
| Q |
8 |
agaaattcatactgttctaactgagcagaatattgagcaactttttgcttgcactgatttgcagacgttgtcacttcttcactttcgtaaaaatcagctg |
107 |
Q |
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| T |
36127165 |
agaaattcatactgttctaactgagcagaatattgagcaactttttgcttgcactgatttgcagatgttgtcacttcttcactttcataaaaatcagctg |
36127264 |
T |
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| Q |
108 |
atttttcataataaacaagagccctttcaatattttgttcagactcacacatttcagcgatttcctgtggaaaccaaaagcaaaagccaatta-tggcat |
206 |
Q |
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| T |
36127265 |
atttttcataataaacaagagccctttcaatattttgttcagactcacacatttcagcgatttcctgtgcaaaccaaaagcaaaagccaattaatggcac |
36127364 |
T |
|
| Q |
207 |
gtttacgacgattcctataagagtgcctaaaaaggattgtcaaaaagaagaataacatttacaattgaatatgaatctcaataattaaaatttagattat |
306 |
Q |
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| T |
36127365 |
gtttacgacgattcctataagagtgcctaaaaaggattgtcaaaaagaagaataacatttacaattgaatatgaatctcaataattaaaatttagattat |
36127464 |
T |
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| Q |
307 |
cgcacaaacnnnnnnnnntaccgaagtagtagtgatatactggtatataccttcaaatacctagcagccatagaaattcttccaatatcacagaacatgt |
406 |
Q |
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| T |
36127465 |
tgcacaaacaaaaaaaaataccgaagtagtagtgatatactggtatataccttcaaatacctagcagccatagaaattcttccaatatcacagaacatgt |
36127564 |
T |
|
| Q |
407 |
ttactgcattatccaagcaggatatagcttctgcataaaagagagtaaaggaagattaacattgaaagtatagaaagttctannnnnnnaatcataatgc |
506 |
Q |
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| T |
36127565 |
ttactgcattatccaagcaggatatagcttctgcataaaagagagtaaaggaagattaacattgaaagtatagaaagttctacttttttaatcataatgc |
36127664 |
T |
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| Q |
507 |
aagttatgccatgttaacaaatgctttgtggctatataatgacttccagttccacatcaaaagttatcgatctcaacgacattatgcccatacaacttaa |
606 |
Q |
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| T |
36127665 |
aagttatgccatgttaaaaaatgctttgtggctatataatgacttccagttccacatcaaaagttatcgatctcaacgacattatgcccatacaacttaa |
36127764 |
T |
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| Q |
607 |
gtttttaggacaatgcttgttgatgtgaagaaccaattcataatttttgcttgaatgcttcaattgtgaagggag |
681 |
Q |
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| T |
36127765 |
gtttttaggataatgcttgttgatgtgaagaaccaattcataatttttgcttgaattcttcaattgtgaagggag |
36127839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 740 - 831
Target Start/End: Original strand, 36127898 - 36127989
Alignment:
| Q |
740 |
gtgatacgacccatttcgagcaaggatcaagctctggaaatttagggaggaatagagaaaaaagataataatactgattagttacttcttga |
831 |
Q |
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| T |
36127898 |
gtgatacgacccttttcgagcaaggatcaagctccagaaatttagagagcaatagataaaaaagatgataataccgattaattacttcttga |
36127989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 32382295 - 32382432
Alignment:
| Q |
17 |
tactgttctaactgagcagaatattgagcaactttttgcttgcactgatttgcagacgttgtcacttcttcactttcgtaaaaatcagctgatttttcat |
116 |
Q |
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|||||||| | |||||||||| |||| || ||||| ||||||||||| |||||||| |||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
32382295 |
tactgttccagctgagcagaaaattgggccactttctgcttgcactggtttgcagaagttgtcacctcttcattttgataaaaatcagctgatttttcaa |
32382394 |
T |
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| Q |
117 |
aataaacaagagccctttcaatattttgttcagactca |
154 |
Q |
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| T |
32382395 |
agtaaacaacagcctgctcaatattttgttcggactca |
32382432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 32382647 - 32382698
Alignment:
| Q |
350 |
tatataccttcaaatacctagcagccatagaaattcttccaatatcacagaa |
401 |
Q |
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|||||||||||||||| |||||||||||||| | ||| |||||||||||||| |
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| T |
32382647 |
tatataccttcaaatatctagcagccatagagagtctgccaatatcacagaa |
32382698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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