View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4447-Insertion-6 (Length: 344)
Name: NF4447-Insertion-6
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447-Insertion-6 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 206 - 344
Target Start/End: Original strand, 41786485 - 41786614
Alignment:
| Q |
206 |
aagttatttgggcaattcctaagttttatactctaagtcctctaagtcttgtaacaccaaagttaaaatacttttaagttttgtaaccaaacaaaaatac |
305 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41786485 |
aagttatttgggcaattcctatgttttatactct---------aagtcttgtaacaccaaagttaaaatacttttaagttttgtaaccaaacaaaaatac |
41786575 |
T |
|
| Q |
306 |
tccaagtttgctactgtgtactggccttcctatttcatc |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41786576 |
tccaagtttgctactgagtactggccttcctatttcatc |
41786614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 41786357 - 41786458
Alignment:
| Q |
90 |
atttaattataagtttttatgccttctaagtatatcaaatttatttgctttatgctctaagtttggttgtattcaatataatctatcaatttgagtgatt |
189 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
41786357 |
atttaattataagtttttatgccttacaagtatatcaaatttatttgctttatgctctaagtttggtcgtattcaatgtaatcaatcaatttgagtgatt |
41786456 |
T |
|
| Q |
190 |
at |
191 |
Q |
| |
|
|| |
|
|
| T |
41786457 |
at |
41786458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University