View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4447-Insertion-7 (Length: 344)
Name: NF4447-Insertion-7
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 41 - 344
Target Start/End: Original strand, 26021579 - 26021882
Alignment:
| Q |
41 |
ggtaccatatataccattaaatttttacatgtagagttctaaaaagagagtaaataattattttggtctctaaatctgggaagtatttgccactataata |
140 |
Q |
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| T |
26021579 |
ggtaccatatatatcattaaatttttacatgtagagttctaaaaaaatagtaaataattattttggtctctaaatctaggaagtatttgccactataata |
26021678 |
T |
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| Q |
141 |
ttagaatttatcaaagttacaaacacatcctcaaatatattttttgttaataattttatttatcaaatttactggagaaaaatatatctgagggtcaaat |
240 |
Q |
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| T |
26021679 |
ttagaatttatcaaagttacaaacacatcctcaaatatattctttgttaataattttatttatcaaatttactggagaaaaatatatctgagggtcaaat |
26021778 |
T |
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| Q |
241 |
taaacaacacctcacatatttagaaattacaaacctttcacctgtgacattggttatgctagacagttatcattgctcgtccccaatgagaaattgctta |
340 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
26021779 |
taaacaacacctcacatatttagaaattacaaaccattcacctgtgacattggttatgctagacagttattattgctcgtctccaatgagaaattgctta |
26021878 |
T |
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| Q |
341 |
tttg |
344 |
Q |
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|||| |
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| T |
26021879 |
tttg |
26021882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 12469924 - 12470021
Alignment:
| Q |
144 |
gaatttatcaaagttacaaacacatcctcaaatatattttttgttaataattttatttatcaaatttactggagaaaaatatatctgagggtcaaatta |
242 |
Q |
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| T |
12469924 |
gaatttctcaaagttacaaaaacatcctcaaatatatattttgtcaataattttatagcttaaatttactaga-aagaatatatatgagggtcaaatta |
12470021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 42309912 - 42310042
Alignment:
| Q |
66 |
tacatgtagagttctaaaaagagagtaaataattattttggtctctaaatctgggaagtatttgccactataatattagaatttatcaaagttacaaaca |
165 |
Q |
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||||| ||||||| |||| | | |||||||||||||||| ||||| || | || |||||| ||| ||||| ||||| ||||||| ||||||||| |||| |
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| T |
42309912 |
tacatatagagttttaaagatatagtaaataattattttagtctccaactgtgtgaagta-ttgtcactaaaatatctgaatttaacaaagttactaaca |
42310010 |
T |
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| Q |
166 |
catcctcaaatatattttttgttaataatttt |
197 |
Q |
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| T |
42310011 |
catcttcaaatatatcccttgttagtaatttt |
42310042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 52669875 - 52669810
Alignment:
| Q |
144 |
gaatttatcaaagttacaaacacatcctcaaatatattttttgttaataattttatttatcaaatt |
209 |
Q |
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| T |
52669875 |
gaatttatcaaaattacaaacgaattctcaaatatcctttttgttaatagttttatctatcaaatt |
52669810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 26212321 - 26212365
Alignment:
| Q |
157 |
ttacaaacacatcctcaaatatattttttgttaataattttattt |
201 |
Q |
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| T |
26212321 |
ttacaaacacattctcaagtatcttttttgttagtaattttattt |
26212365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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