View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4447-Insertion-8 (Length: 293)
Name: NF4447-Insertion-8
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447-Insertion-8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 2356289 - 2356005
Alignment:
| Q |
8 |
tattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaac |
107 |
Q |
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| T |
2356289 |
tattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaac |
2356190 |
T |
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| Q |
108 |
tcctttcgtcttaagttcgttccaatcgctccggtatgtcatttcctgttttagcctgtttcccttccctgttcgttttaaatattctggttcatcgctg |
207 |
Q |
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| T |
2356189 |
tcctttcgtcttaagttcgttccaatcgctccggtatgtcatttcctgttttagcctgtttcccttccctgttcattttaaatattctggttcatcgctg |
2356090 |
T |
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| Q |
208 |
aaattttgaggatttttcttgaaggactttattttcaattgtggcggtttatcagtggccttcattttttgtcacaaactgggact |
293 |
Q |
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| T |
2356089 |
aaattttgaggatttttcttgaaggactttattttcaattgtggcggtttatcagtggccttcat-ttttgtcacaaactgggact |
2356005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 23747522 - 23747614
Alignment:
| Q |
51 |
aaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaactcctttcgtcttaagttcgttccaatcgctccggta |
143 |
Q |
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| T |
23747522 |
aaagaggatcaacgtccatccttcattgattttatctccactttcctctctgctaattcctttcgacttaatttcgttccaattgctccggta |
23747614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 22722217 - 22722116
Alignment:
| Q |
10 |
ttgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaactc |
109 |
Q |
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|||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||| || |
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| T |
22722217 |
ttgtaggtataaatggagtctgtttgatgagaaatgcatggaaagaggatcaacgtccatctttcattgattttatgtcaactttcctctctgctaattc |
22722118 |
T |
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| Q |
110 |
ct |
111 |
Q |
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|| |
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| T |
22722117 |
ct |
22722116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 23747696 - 23747753
Alignment:
| Q |
235 |
tttattttcaattgtggcggtttatcagtggccttcattttttgtcacaaactgggact |
293 |
Q |
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| T |
23747696 |
tttattttcaattgtggcggtttatctgtggccttca-tttttgtgacaaactgagact |
23747753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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