View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4447_high_1 (Length: 249)
Name: NF4447_high_1
Description: NF4447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4447_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2182157 - 2181946
Alignment:
| Q |
1 |
cacatatgaatgattctagacaaaaaatgactccaagcaatgatttttaaaaagaacttcgagataaggtaaagtttttctctctnnnnnnnn-taggga |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2182157 |
cacatatgaatgattctagacaaaaaatgactccaagcaatgatttttaaaaagaacttcgagataaggtaaagtttttctctctaaaaaaaaataggga |
2182058 |
T |
|
| Q |
100 |
cgtctcaatttttaaaatctcatcatatcttgacaaatatagattttttcatcacatttattttcacaataatgataaataaacactaaaaaatttgata |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
2182057 |
cgtctcaatttttaaaatctcatcatatcttgataaatatagattttttcatcacatttattttcacaataatgataaataagcatgagaaaatttgata |
2181958 |
T |
|
| Q |
200 |
gtcattcaacat |
211 |
Q |
| |
|
|||||||||||| |
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|
| T |
2181957 |
gtcattcaacat |
2181946 |
T |
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