View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448-Insertion-1 (Length: 1007)
Name: NF4448-Insertion-1
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 22947779 - 22948172
Alignment:
| Q |
10 |
tttgacaattctcttaattttctatgtggttgagagccaataagattatgaatgtttcctatgattggaagcttccgtggccctggcggtatatttggaa |
109 |
Q |
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| T |
22947779 |
tttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatgattggtagcttccatggccctggtggtatatttgaaa |
22947878 |
T |
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| Q |
110 |
tcgattcaattttcttgatctttttctttagatttagtgtcacaatgatagagaggaggaaaatggaaaaaagtgtgaaaggggaaattgtttgaagatc |
209 |
Q |
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| T |
22947879 |
ttgagtcaattttcttgatttttttctttagttttagtgtcacaatgatggagaggaggaaaatggaaaaaagtgtgaaagggggaattgtttgaagatc |
22947978 |
T |
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| Q |
210 |
catgtagataaagaaagcaacaggggaataatgtggaataagnnnnnnn-ctctagtttaatgaagaacatacattttatgtactcatatatatagacat |
308 |
Q |
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| T |
22947979 |
catgtagataaagaaagcagcaggggaataatgtggaataagttttttttctctagtttaatgaagaacatcaactttatgtactcatatatatagacat |
22948078 |
T |
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| Q |
309 |
tggaatctctgcaaagnnnnnnnnnnnnnnnnnnnngtataataactatgtggtcacaatgtaaaactctgtttatatttcaccaatgttaata |
402 |
Q |
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| T |
22948079 |
tggaataactgcatagtgtttttttaatttttttttgtataataactacgtggtcacaatgtaaaacagtgtttacatttcaccaatgttaata |
22948172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 704 - 971
Target Start/End: Original strand, 22948705 - 22948973
Alignment:
| Q |
704 |
atagtgtgtagcctgacatatnnnnnnntgtagtatgaaatccaaacatgttttgacttgattgagagaaagcatagattccttttaattttt-gctgct |
802 |
Q |
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| T |
22948705 |
atagtgggtagcctgacatataaaaaaatgtagtatggaatccaaacttgttttgacttgattgagagaaagcatagattccttttaatttttcggtgct |
22948804 |
T |
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| Q |
803 |
tagattccatatgggaagcagaaatgataaacaacagtgtttagaattatatattgattgatttctctcgctatcaatgattcatgnnnnnnntatacct |
902 |
Q |
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| T |
22948805 |
tagattccatatgg-aagcagaaatgataaacaacagtgtttagaattatatattgattgatttctctcgctatcaatgattcatgaaaagaatatacct |
22948903 |
T |
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| Q |
903 |
tgatttatgtgtgataaattgcaaagaatttgaagtttttc-aaatatacctaccatttcaaattatagt |
971 |
Q |
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| T |
22948904 |
tgatttatgtgtgataaattgcaaagaatttgaagtttttcaaaatatacctaccatttcaaattatagt |
22948973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 22973618 - 22973826
Alignment:
| Q |
11 |
ttgacaattctcttaattttctatgtggttgagagccaataagattatgaatgtttcctatgattggaagcttccgtggccctggcggtatatttggaat |
110 |
Q |
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| T |
22973618 |
ttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttccaatgattggtagcttccatggccctggtggtatatttgcaat |
22973717 |
T |
|
| Q |
111 |
cgattcaattttcttgatctttttctttagatttagtgtcacaatgatagagaggaggaaaatggaaaaaagtgtgaaaggggaaattgtttgaagatcc |
210 |
Q |
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| T |
22973718 |
tgagtcaattttcgtgattttcttccttaattttagtgtcacaataatggagagtacgaaaatggaaaacagggttaaagtgtaaattgtttgaagatcc |
22973817 |
T |
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| Q |
211 |
atgtagata |
219 |
Q |
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| T |
22973818 |
atgtagata |
22973826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 22943178 - 22943386
Alignment:
| Q |
7 |
atttttgacaattctcttaattttctatgtggttgagagccaataagattatgaatgtttcctat----gattggaagcttccgtggccctggcggtata |
102 |
Q |
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|||||||||| ||||| ||||||||||||| || ||||||||| |||||||| ||||||||||| |||||| |||||| || ||||| |||||| |
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| T |
22943178 |
atttttgacagttctcctaattttctatgtagtggagagccaaatagattatggatgtttcctatatatgattggtagcttcgtaggacctggtggtata |
22943277 |
T |
|
| Q |
103 |
tttggaatcgattcaattttcttgatctttttctttagatttagtgtcacaatgatagagaggaggaaaatggaaaaaagtgtgaaaggggaaattgttt |
202 |
Q |
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| T |
22943278 |
tttggaattgagtctgttttctt---------cttttggtttattgtcacaatgattaagaggaggaaaatggaaaaaagggctaaagggaaaattgttt |
22943368 |
T |
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| Q |
203 |
gaagatccatgtagataa |
220 |
Q |
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| T |
22943369 |
gaagatccatgtagataa |
22943386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 492 - 636
Target Start/End: Original strand, 22948524 - 22948662
Alignment:
| Q |
492 |
ggtcatcaatacattcttt-aactcttattttttcaataccctatttttgattggctatgattctgattcatataactttcattgaataataggtaaaag |
590 |
Q |
| |
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||||||| |||| |||||| |||||| |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
22948524 |
ggtcatcgataccttcttttaactctcgttttttgaatacactatttttgattggctatgattc------atataacttcaattgaataataggaaaaa- |
22948616 |
T |
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| Q |
591 |
tgatttaaagagtgatgttgttggagcttctgatagttccaaagtc |
636 |
Q |
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||||||||||||| ||| |||||| ||||| |||| |||||||||| |
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| T |
22948617 |
tgatttaaagagtaatgctgttggcgcttccgataattccaaagtc |
22948662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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