View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448-Insertion-2 (Length: 968)
Name: NF4448-Insertion-2
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 174 - 966
Target Start/End: Complemental strand, 12640111 - 12639315
Alignment:
| Q |
174 |
tgttaaaaataatatcattgttttttaattaattcaccaaattttctaaatcaaagtcctttttctgtcaaacttttaatacatttttatcataaaaaac |
273 |
Q |
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| T |
12640111 |
tgttaaaaataatatcattgttttttaattaattgaccaaattttctaaatcaaagtcctttttctgtcaaacttttaatacatttttatcataaaaaac |
12640012 |
T |
|
| Q |
274 |
gaaacagagtaagaaattaaaataatgcaactgaaatcagcttaaacacactacactagtactataaattttcttttttagggtaaccatattattaatg |
373 |
Q |
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| T |
12640011 |
gaaacagagtaagaaattaaaataatgcaactgaaatcagcttaaacacactacactagtactataaattttcttttttagggtaaccatattattaatg |
12639912 |
T |
|
| Q |
374 |
taaaatgtctattacctttgttaata-tagtaaaaactaatctttgttagtagattctcttctttcaatcatttttcttcatgtaataaaatctaacttg |
472 |
Q |
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| T |
12639911 |
taaaatgtctattacctttgttaatactagtaaaaactaatctttgttagtagattctcttctttcaatcatttttcttcatgtaataaaatctaacttg |
12639812 |
T |
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| Q |
473 |
agatcttacttaaagatctgtatctagtagatagaaaatatgtaaaataaactnnnnnnnncagcataattatacctgcattggtgttaaacgtgcatta |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12639811 |
agatcttacttaaagatctgtatctagtagatagaaaatatgtaaaataaactaaaaaaaacagcataattatacctgcattggtgttaaacgtgcatta |
12639712 |
T |
|
| Q |
573 |
aagaagtcctgagccatacgaaaaccttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatcccacttaaaagaacttctaa |
672 |
Q |
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| T |
12639711 |
aagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatcccacttaaaagaacttctaa |
12639612 |
T |
|
| Q |
673 |
ctcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaac |
772 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12639611 |
ctcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaac |
12639512 |
T |
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| Q |
773 |
aaaaataaccaaacaaactagcaagataataagcacaagcatagcaactaggtaaaatattaggagacatgagattctcc-aaaggaaccaatgagacca |
871 |
Q |
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| T |
12639511 |
aaaaataaccaaacaaactagcaagataataagcacaagcatagcaactaggtagaatattaggagacatgagattctccaaaaggaaccaatgagacca |
12639412 |
T |
|
| Q |
872 |
gctaaagacacaactaagagaagaacaccaaagattatgactgggccatt-gag-aatttgacacatgtgtctgctggttcgtttg-tagccagattc |
966 |
Q |
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|| | |||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12639411 |
gcaagagacacaactaagagaagaacaccaaggattatgact-ggccattggagaaatttgacacatgtgtctgctggttcgtttgttagccagattc |
12639315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 12640793 - 12640675
Alignment:
| Q |
8 |
gtatgcacattgtgttggtggtttgcagcacctagactgaaaataattaaagaaaaatttatcggcaaaatatatgttagtgaagaagaaagtgatagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |
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| T |
12640793 |
gtatgcacattgtgttggtggtttgcagcacccagactgaaaataattaaagaaaaatttattggcaaaatatatgtaagt---gaagaaagtgatagaa |
12640697 |
T |
|
| Q |
108 |
tttaattaagtgtgtttcataa |
129 |
Q |
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|||||||||||||||||||||| |
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| T |
12640696 |
tttaattaagtgtgtttcataa |
12640675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 12640190 - 12640145
Alignment:
| Q |
132 |
gaaaaaacatagatacatgggtctaattgagaggaaataaaatgtt |
177 |
Q |
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| T |
12640190 |
gaaaaaacatagatacatgggtctaattgagaggaaataaaatgtt |
12640145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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