View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4448-Insertion-4 (Length: 703)
Name: NF4448-Insertion-4
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 90 - 685
Target Start/End: Complemental strand, 34071295 - 34070690
Alignment:
| Q |
90 |
acttcaattgctattgtgcgacgcatcactttgtgatatccaattattttcttattttagttttatgatttctctggtactttctgtgctggtttattaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34071295 |
acttcaattgctattgtgcgacgcatcactttgtgatatccaattgttttcttattttagttttatgatttctctggtactttctgtgctggtttattaa |
34071196 |
T |
|
| Q |
190 |
gatacatagcatgattctgatgatgcagaattcctttcattaaactatttccttatttttggcacttttgtgatcctaccttcatgtattgcgttgagt- |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34071195 |
gatacatagcatgattctgatgatgcagaattcctttcattaaactattttcttatttttggcacttttgtgatcctacctacatgtattgcgttgagtt |
34071096 |
T |
|
| Q |
289 |
--ttgaagatccagttgtcgcaagaattcttaaacataaaacaccggtgtagtgttcggcctttgtagcatgtcggtaacctaacaattatgttgataaa |
386 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34071095 |
tgttgcagatccagttgtcacaagaattcttaaacataaaacaccagtgtagtgttctgcctttgtagcatgtcggtaacctaacaattatgttgataaa |
34070996 |
T |
|
| Q |
387 |
acacatgaataattctaagcagtaaacaggaattgcacttacgtattttcag-taagtaaacaatttattgaacaatcatccatcatcgttt-agagtgt |
484 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34070995 |
acacatgaacaattctaagcagtaaacaggaattgcacttaagtattttcagttaagtaaagtgtttattgaacaatcatccatcatcgtttaagagtgt |
34070896 |
T |
|
| Q |
485 |
gattgnnnnnnnnnnnnncgaaagagacaataatgtccaaatgcaaataggaatcactgaaataagaatcgttaaatggaaggtggtccctgtctgtttg |
584 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34070895 |
gattgtttttctttttttcgaaagagacaataatgtccaaatgcaaataggaatcactcaaataagaatcgttaaatggaaggtggtccctgtctgtttg |
34070796 |
T |
|
| Q |
585 |
tggtgaaaagtcaccaccaccgttttatatgcggcgaatcgattctac-----nnnnnnnnncttccttccatcatatgccaccgtcacgccacaaccct |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34070795 |
tggtgaaaagtcaccaccaccgttttatatgcggcgaatcgattctacttttttttttctttcttccttccatcatatgccaccgtcacgccacaaccct |
34070696 |
T |
|
| Q |
680 |
ccaatt |
685 |
Q |
| |
|
|||||| |
|
|
| T |
34070695 |
ccaatt |
34070690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 20675008 - 20675175
Alignment:
| Q |
131 |
aattattttcttattttagttttatgatttctctggtactttctgtgctggtttattaagatacatagcatgattctgatgatgcagaattcctttcatt |
230 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20675008 |
aattattttcttattattgttttttgatttctcaaa-actttctgtgctggttta---agatacatagcatgattctgatgatgcagaattcctttcatt |
20675103 |
T |
|
| Q |
231 |
aaactatttccttatttttggcacttttgtgatcctaccttcatgtattgcgttgagtttgaagatccagtt |
302 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||| | |||||||| |
|
|
| T |
20675104 |
aaactattttcttatttttgccacttttgtgatcctacctccatgtgttgcgttgagtttgcacatccagtt |
20675175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University