View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448-Insertion-5 (Length: 651)
Name: NF4448-Insertion-5
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 178 - 646
Target Start/End: Original strand, 42189594 - 42190062
Alignment:
| Q |
178 |
agatttattaattgttaatttctcgaatgcagggtgttaggcttgagctatgcaccgaggacagacaagggcttctcgccgaggtgatgagaacattccg |
277 |
Q |
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| T |
42189594 |
agatttattaattgttaatttctcgaatgcagggtgttaggcttgagctatgcaccgaagacagacaagggcttctcgccgaggtgatgagaacattccg |
42189693 |
T |
|
| Q |
278 |
agagaacggattaaatgtgactagggccgacataactacgactggggacttggctgcaaatgttttctatgcaacagatgccattggatacccagctgac |
377 |
Q |
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| T |
42189694 |
agagaacggattaaatgtgactagggccgacataactacgactggggacttggctgcaaatgttttctatgcaacagatgccattggatacccagctgac |
42189793 |
T |
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| Q |
378 |
caaaaaatcatcgaatcagttcgtcaaaaaattggtttaaccaatttaaaagtaaaggagttgccttttgcaagtgatcaaaaggtagagagggaagatc |
477 |
Q |
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| T |
42189794 |
caaaaaatcatcgaatcagttcgtcaaaaaattggtttaaccaatttaaaagtaaaggagttgccttttgcaagtcatcaaaaggtagagagggaagatc |
42189893 |
T |
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| Q |
478 |
aatcagttggagttggaggggcagtgttattgtctcttggtagcatagtgagaaggaatctgtacaatttgggtttaatcaaatcttgttcttaaaagca |
577 |
Q |
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| T |
42189894 |
aatcagttggagttggaggggcagtgttattgtctcttggtagcatagtgagaaggaatctgtacaatttgggtttaatcaaatcttgttcttaaaagca |
42189993 |
T |
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| Q |
578 |
gaaagataagagcgtgagggaattttttgagtgtggaagatattcactactttttatagcatattattc |
646 |
Q |
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| T |
42189994 |
gaaagataagagcgtgagggaattttttgagtgtggaagatattcactactttttatagcatattattc |
42190062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 42189425 - 42189534
Alignment:
| Q |
8 |
agttttacattagacacaaggatggaaccccaattagttctgaaccggagcgtcaacgtgtgattcaatgcttgcaagctgcagtagagagaagatcatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42189425 |
agttttacattagacacaaggatggaaccccaattagttcagaaccggagcgtcaacgtgtgattcaatgcttgcaagctgcagtagagagaagatcatg |
42189524 |
T |
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| Q |
108 |
cgaggtatgg |
117 |
Q |
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| T |
42189525 |
cgaggtatgg |
42189534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 464 - 572
Target Start/End: Original strand, 3366740 - 3366848
Alignment:
| Q |
464 |
agagagggaagatcaatcagttggagttggaggggcagtgttattgtctcttggtagcatagtgagaaggaatctgtacaatttgggtttaatcaaatct |
563 |
Q |
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|||||| || |||||| |||||||| |||| || |||||||||| || | |||| ||| | ||||||||||||||||| | |||||| ||||| ||||| |
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| T |
3366740 |
agagagagaggatcaaacagttggaattggtggtgcagtgttatggtttattgggagccttgtgagaaggaatctgtatagtttgggattaattaaatca |
3366839 |
T |
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| Q |
564 |
tgttcttaa |
572 |
Q |
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| T |
3366840 |
tgttcttaa |
3366848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 3366296 - 3366365
Alignment:
| Q |
8 |
agttttacattagacacaaggatggaaccccaattagttctgaaccggagcgtcaacgtgtgattcaatg |
77 |
Q |
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| T |
3366296 |
agttttatataagacacaaggatggcaccccaattagttcagaaccagagcgacaacgcgtaattcaatg |
3366365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 24461844 - 24461903
Alignment:
| Q |
58 |
cgtcaacgtgtgattcaatgcttgcaagctgcagtagagagaagatcatgcgaggtatgg |
117 |
Q |
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| T |
24461844 |
cgtcaacatgcgattcattgtttgcaagttgcagtggagagaagatcatgtgaggtatgg |
24461903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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