View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448-Insertion-7 (Length: 248)
Name: NF4448-Insertion-7
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 8583871 - 8584113
Alignment:
| Q |
7 |
agatttgtgatcctttatctatctatattagtgtgtgtcactcacagttt-gatactctttttcttcttcttgttggtttgaaggttgaagtgtttgttg |
105 |
Q |
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| T |
8583871 |
agatttgtgatcctttatctatctatattagtgtgtgtcactcactgttttgatactctttttcttcttcttgttggtttgaaggttgaagtgtttgttg |
8583970 |
T |
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| Q |
106 |
ttggaggaatttgctctcaaaaagaagaggaacagtagatttatgtcttctcagtttattctggaatcagttattggggctctgttgaagaacctctgga |
205 |
Q |
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| T |
8583971 |
ttggaggaatttgctctaaaaaagaagaggaacagtagatttatgtcttctcagtttattctggaatcagttattggggctctgttgaagaacctctgga |
8584070 |
T |
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| Q |
206 |
ttttctctgtttcttatcttctgctcactctttctgtgttctg |
248 |
Q |
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| T |
8584071 |
ttttctctgtttcttatcttctgctcactctttctgtgttctg |
8584113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 8600608 - 8600744
Alignment:
| Q |
111 |
ggaatttgctctcaaaaagaagaggaacagtagatttatgtcttctcagtttattctggaatcagttattggggctctgttgaagaacctctggattttc |
210 |
Q |
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| T |
8600608 |
ggaatttgctcttaaaaacaagaggaatagtagatttatgtcttctcagtctatacttgaatcactgattgaggctctgttgaagaacctctggattttc |
8600707 |
T |
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| Q |
211 |
tctgtttcttatcttctgctcactctttctgtgttct |
247 |
Q |
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| T |
8600708 |
tctatttcttctcttctgcttactttttctgtgttct |
8600744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 47424008 - 47424111
Alignment:
| Q |
110 |
aggaatttgctctcaaaaagaagaggaacagtagatttatgtcttctcagtttattctggaatcagttattggggctctgttgaagaacctctggatttt |
209 |
Q |
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||||||||| ||| ||||||||| ||||| | |||||||||||||| ||||||| || ||||| | ||||||| || ||||| ||||||||||| ||| |
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| T |
47424008 |
aggaatttggtctttaaaagaagacgaacaatgaatttatgtcttctcggtttattttgaaatcattgattggggttccgttgaggaacctctggacttt |
47424107 |
T |
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| Q |
210 |
ctct |
213 |
Q |
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|||| |
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| T |
47424108 |
ctct |
47424111 |
T |
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