View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448-Insertion-9 (Length: 162)
Name: NF4448-Insertion-9
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 7e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 7e-66
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 26017837 - 26017991
Alignment:
| Q |
8 |
gtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatct |
107 |
Q |
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| T |
26017837 |
gtttcaaggagcattggagatagacacatgaaacaatatgtgatagcagaacctgagaccaaagtactcagaattgaacctcatcatgactttttaatct |
26017936 |
T |
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| Q |
108 |
tagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatg |
162 |
Q |
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| T |
26017937 |
tagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatg |
26017991 |
T |
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Target: chr3; HSP #2
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 26003091 - 26003241
Alignment:
| Q |
8 |
gtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatct |
107 |
Q |
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| T |
26003091 |
gtttcaaggagcattggagatagacacatgaaacaatatgtgatagcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatct |
26003190 |
T |
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| Q |
108 |
tagcttcagatggattatgggaaaaggtataggacttcatcaattaattgc |
158 |
Q |
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| T |
26003191 |
tagcttcagatggattatgggaaaaggtataggacttgaccaattaattgc |
26003241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 30374365 - 30374471
Alignment:
| Q |
30 |
gacacatgaaacaatgggtgatagcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatggga |
129 |
Q |
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| T |
30374365 |
gacacttgaaacaatgggtgacagcggagcccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatggga |
30374464 |
T |
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| Q |
130 |
aaaggta |
136 |
Q |
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| T |
30374465 |
taaggta |
30374471 |
T |
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