View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4448_low_2 (Length: 367)
Name: NF4448_low_2
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 32814887 - 32814535
Alignment:
| Q |
1 |
gctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgttctgaagcaaaactaacaaatgggctgaataacttaggttgatcgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814887 |
gctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgtt----agcaaaactaacaaatgggctgaataacttaggttgatcgga |
32814792 |
T |
|
| Q |
101 |
ttctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagttctgatgcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814791 |
ttctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagttctgatgcaggt |
32814692 |
T |
|
| Q |
201 |
aataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaactgtatttaaattgaaacttgtgttttgaatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814691 |
aataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaactgtatttaaattgaaacttgtgttttgaatag |
32814592 |
T |
|
| Q |
301 |
gagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatgcctatg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814591 |
gagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatgcctatg |
32814535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 8800261 - 8800147
Alignment:
| Q |
89 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
188 |
Q |
| |
|
|||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || |||| || |||||||| | ||||| | |||||| | || |
|
|
| T |
8800261 |
aggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtcttggt |
8800162 |
T |
|
| Q |
189 |
tctgatgcaggtaat |
203 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
8800161 |
tctcatgcaggtaat |
8800147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 7986393 - 7986537
Alignment:
| Q |
57 |
gaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctt |
156 |
Q |
| |
|
|||||| ||||||| ||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| || |
|
|
| T |
7986393 |
gaagcataactaactcatgggctaaataccttaggttgatcgtattctttactcatcggttgtctacccacacaactacggttttatcccacgaaccatt |
7986492 |
T |
|
| Q |
157 |
tgtgaagatgaagatcccttggatgtcctagttctgatgcaggta |
201 |
Q |
| |
|
|||||||| ||||| ||||||| || ||||||||||||||| |
|
|
| T |
7986493 |
tgtgaagacagtgatcctatggatgttctggttctgatgcaggta |
7986537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 49126665 - 49126778
Alignment:
| Q |
89 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
188 |
Q |
| |
|
|||||||||| ||| | || || |||||||| ||||| ||||||||||||||||| || | || || |||||||| | ||||| | |||||||| || |
|
|
| T |
49126665 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
49126764 |
T |
|
| Q |
189 |
tctgatgcaggtaa |
202 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
49126765 |
tctcatgcaggtaa |
49126778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University