View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4448_low_4 (Length: 237)
Name: NF4448_low_4
Description: NF4448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4448_low_4 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1904860 - 1905078
Alignment:
| Q |
1 |
tgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1904860 |
tgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagttt |
1904959 |
T |
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| Q |
101 |
agttcttttgctcatttctgatttcaatgattgttaaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaa |
200 |
Q |
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| T |
1904960 |
agttcttttgctcatttctgatttcaatgattgttaaagtgttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaa |
1905059 |
T |
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| Q |
201 |
ttggtctttatgctgtatt |
219 |
Q |
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||||||||||||||||||| |
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| T |
1905060 |
ttggtctttatgctgtatt |
1905078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1909093 - 1909311
Alignment:
| Q |
1 |
tgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909093 |
tgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagttt |
1909192 |
T |
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| Q |
101 |
agttcttttgctcatttctgatttcaatgattgttaaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaa |
200 |
Q |
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| T |
1909193 |
agttcttttgctcatttctgatttcaatgattgttaaagtgttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaa |
1909292 |
T |
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| Q |
201 |
ttggtctttatgctgtatt |
219 |
Q |
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| T |
1909293 |
ttggtctttatgctgtatt |
1909311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 1893627 - 1893703
Alignment:
| Q |
141 |
gttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtatt |
219 |
Q |
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| T |
1893627 |
gttcatttgtgtatattttt--ttcattgtgcagtataattggagccacaataatcacaattggtctttatgctgtatt |
1893703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 1914566 - 1914623
Alignment:
| Q |
162 |
atgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtatt |
219 |
Q |
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| T |
1914566 |
atgcattttgcagtataattggagccataataatctcaattggtctttatgctgtatt |
1914623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 1899533 - 1899615
Alignment:
| Q |
136 |
aaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtatt |
219 |
Q |
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|||| |||||||||| ||||||||| | |||| |||||||||||||||||||||||| |||| ||||| ||||||||| |||| |
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| T |
1899533 |
aaagtgttcatttgtatatatttttttt-cattgtgcagtataattggagccacaatagtatcgattggcctttatgctatatt |
1899615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 46439 - 46489
Alignment:
| Q |
167 |
ttttgcagtataattggagccacaataatatcaattggtctttatgctgta |
217 |
Q |
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| T |
46439 |
ttttgcagtttaattggagccacaataatatcaattgggttttatactgta |
46489 |
T |
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