View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4449-Insertion-2 (Length: 513)
Name: NF4449-Insertion-2
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4449-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 96 - 439
Target Start/End: Original strand, 20495230 - 20495597
Alignment:
| Q |
96 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatactatccttacatattaaatcagaacataaataacatattctaagccatgaaaattg |
195 |
Q |
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| T |
20495230 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatattatccttacatattaaatcagaacataaataacatattctaagccatgacaattg |
20495329 |
T |
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| Q |
196 |
aactttgttgacccatatttcattctccactgtgtaca--------atgaaactatgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
287 |
Q |
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| T |
20495330 |
aactttgttgacccatatttcattctccactgtgtacaatgaaattatgaaactctgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
20495429 |
T |
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| Q |
288 |
aacattcaaaagagcat-aaaaaacacaaata---------------aatcacattcattgaccaagtagcatccattgacatttaaacagaataattta |
371 |
Q |
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| T |
20495430 |
aacattcaaaagagcataaaaaaacaaaaataattaaatcactaaataatcacattcattgaccaagtagcatccattgacatttaaacagaataattta |
20495529 |
T |
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| Q |
372 |
cataagattatatatacatttcaccaaaaaatcaaccatctctttacatatggatggctctaaagtat |
439 |
Q |
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| T |
20495530 |
cataagattctatatacatttcaccaaaaaattaaccatctctttacatatggatagctctgaagtat |
20495597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 20494753 - 20494787
Alignment:
| Q |
9 |
cattgttgaacactgatgcagaagtttctgttatg |
43 |
Q |
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| T |
20494753 |
cattgttgaacactgatgcagaagtttctgttatg |
20494787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 47625155 - 47625119
Alignment:
| Q |
7 |
aacattgttgaacactgatgcagaagtttctgttatg |
43 |
Q |
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| T |
47625155 |
aacattgttgaacactgatgcagatgtttctgttatg |
47625119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 47643477 - 47643540
Alignment:
| Q |
34 |
ttctgttatgctgcaaaaatatctatgagcaacttcttgatgagctttaactgctgcacttttt |
97 |
Q |
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| T |
47643477 |
ttctgttatgctgcaaaaatatctatgagcaacttcttgatgagctttaactgctgcacttttt |
47643540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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