View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4449_low_1 (Length: 854)
Name: NF4449_low_1
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4449_low_1 |
 | |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 729; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 16 - 799
Target Start/End: Complemental strand, 48912011 - 48911227
Alignment:
| Q |
16 |
tcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48912011 |
tcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttactcagctgcttcggtggtg |
48911912 |
T |
|
| Q |
116 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911911 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
48911812 |
T |
|
| Q |
216 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtggg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48911811 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtggg |
48911712 |
T |
|
| Q |
316 |
tgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911711 |
tgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcga |
48911612 |
T |
|
| Q |
416 |
caccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgga |
515 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911611 |
cgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgga |
48911512 |
T |
|
| Q |
516 |
gggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaag |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911511 |
gggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaag |
48911412 |
T |
|
| Q |
616 |
tatatattaagtggtttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatatatgaattagaatgaacgtgat |
715 |
Q |
| |
|
|| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48911411 |
tagatggtaagtgctttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatgaatgaattagaatgaacgtgat |
48911312 |
T |
|
| Q |
716 |
gatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtccaacaatggaga-gatcctaactctggttgccc |
799 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
48911311 |
gatgagagaggtattgtagcaattaactgtttctgctattgcttttaatgtccaacaatggagaggatcctaactctggttgccc |
48911227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 442 - 599
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
442 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
541 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | || |||| || |||||| || |||||| ||||| ||||| ||||| |||||||| |||| | |
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|
| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
|
| Q |
542 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
599 |
Q |
| |
|
||| || | |||||||||| || || ||||||||||||||| |||||||||||||||| |
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|
| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 617
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
488 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
587 |
Q |
| |
|
|||||||| |||||||| |||||| || | ||||||||||| || ||| |||| ||| | |||||||||| |||||||| |||| ||||||||| |
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| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
|
| Q |
588 |
gtggccaggtgctaagtaaggtatgaagta |
617 |
Q |
| |
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||| || | ||||||||| || |||||||| |
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| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Complemental strand, 6177 - 5536
Alignment:
| Q |
16 |
tcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtg |
115 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||||| | |||||||||||| || | ||||| ||||||||| || | |
|
|
| T |
6177 |
tcaccgtcaagttcagaaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggag |
6078 |
T |
|
| Q |
116 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6077 |
ctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaa |
5978 |
T |
|
| Q |
216 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtggg |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| || || |||||||| |||||| |
|
|
| T |
5977 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
5878 |
T |
|
| Q |
316 |
tgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcga |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| ||||||| ||| || |||| ||| || || ||||||||||||| || | ||||| ||||| |
|
|
| T |
5877 |
tgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttcga |
5778 |
T |
|
| Q |
416 |
caccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgga |
515 |
Q |
| |
|
| ||||| |||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
5777 |
cgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattgga |
5678 |
T |
|
| Q |
516 |
gggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaag |
615 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||| |
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|
| T |
5677 |
gggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaag |
5578 |
T |
|
| Q |
616 |
tatatattaagtggtttctcttctccttcttccgtattcatc |
657 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
5577 |
tagatagtaagtgctttctcttctccttcttccatatccatc |
5536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 640
Target Start/End: Complemental strand, 10159 - 9553
Alignment:
| Q |
18 |
accgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgct |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || | |||||||||||| |||| | | || || |||| | || ||||| |||||| || |||| | |
|
|
| T |
10159 |
accgtcaagttctacaaaattattgacaaggatcccttgacttttgaaaaccatctccaaacgctctcccaagatttcactcatctgcttaggcggtgtt |
10060 |
T |
|
| Q |
118 |
gcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaaca |
217 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10059 |
gcattcatgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaaca |
9960 |
T |
|
| Q |
218 |
gagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtg |
317 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||| |
|
|
| T |
9959 |
gagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtg |
9860 |
T |
|
| Q |
318 |
ctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgaca |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| ||| || |||||||| | ||| | || ||| |||| || |||| ||| ||| |
|
|
| T |
9859 |
ctgctccacgaagtgttggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttctaca |
9760 |
T |
|
| Q |
418 |
ccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagg |
517 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
9759 |
ccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttggaag |
9660 |
T |
|
| Q |
518 |
gtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagta |
617 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
9659 |
gtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaagta |
9576 |
T |
|
| Q |
618 |
tatattaagtggtttctcttctc |
640 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
9575 |
gattttaagtgctttctcttctc |
9553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
193 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
292 |
Q |
| |
|
|||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
|
|
| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
|
| Q |
293 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
329 |
Q |
| |
|
| || ||||||||||| ||||| | ||| |||||||| |
|
|
| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 711 - 767
Target Start/End: Original strand, 31742730 - 31742786
Alignment:
| Q |
711 |
gtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtc |
767 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||| |
|
|
| T |
31742730 |
gtgatgatgagagagttattgtagcaattaattatttccgctattgcttttagtgtc |
31742786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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