View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4449_low_3 (Length: 330)
Name: NF4449_low_3
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4449_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 41131041 - 41131353
Alignment:
| Q |
1 |
tataattaacaccactagcatctttgctctctccacttcttacaactttcagcttcaactttctttcttaactctatgagtaattgattattgaattaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41131041 |
tataattaacaccactagcatctttgctctctccacttcttacaactttcagcttcaactttctttcttaactctatgggtaattgattattgaattaca |
41131140 |
T |
|
| Q |
101 |
ttnnnnnnnnnnnncaagggatactattggattacaccgcaggtcaaatgtgcaaaacgcaagaaaacttaacttcttacttaccttatcttgtccttga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41131141 |
ttaaaaataaaaa-caagggatactattggattacaccgcaggtcaaatgtgcaaaacgcaagaaaacttaacttcttacttaccttatcttgtccttga |
41131239 |
T |
|
| Q |
201 |
cattttcatcactaccctaccaatagaattgtgacaaaataattgaaacaaaataaatgaaagaattcataagaaatactactaacacattgggagaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41131240 |
cattttcatcactaccctaccaatagaattatgacaaaataattgaaacaaaataaatgaaagaattcataagaaatactactaacacattgggagaaac |
41131339 |
T |
|
| Q |
301 |
aagcaattcaaagg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41131340 |
aagcaattcaaagg |
41131353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University