View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4449_low_4 (Length: 326)
Name: NF4449_low_4
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4449_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42917792 - 42917486
Alignment:
| Q |
1 |
caattttgtggctccattttttaataaatgttgtatcaggtattatcttctggaccccaagctcatcatcgctgaaatcagttaacaatgtagacnnnnn |
100 |
Q |
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| T |
42917792 |
caattttgtggctccattttttaataaatgttgtatcaggtattatcttctggaccccaagctcatcatcgctgaaaccagttaacaatgtatacaaaaa |
42917693 |
T |
|
| Q |
101 |
nnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatgaagcagcaatttgataccgcataatggacttgtaaaccctaccctgga |
200 |
Q |
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| T |
42917692 |
aaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatgaagcagcaatttgatacagcataatggacttgtaaaccctaccctgga |
42917593 |
T |
|
| Q |
201 |
aacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcccaatttcacccaacccaccaataggaagaactcgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917592 |
aacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcccaatttcacccaacccaccaataggaagaactcgaa |
42917493 |
T |
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| Q |
301 |
ggggcgg |
307 |
Q |
| |
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||||||| |
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| T |
42917492 |
ggggcgg |
42917486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 33965973 - 33966070
Alignment:
| Q |
198 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcccaatttcacccaacccaccaataggaagaac |
295 |
Q |
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| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcattccaatttcacctaaaccaccaataggaagaac |
33966070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33965240 - 33965316
Alignment:
| Q |
1 |
caattttgtggctccattttttaataaatgttgtatcaggtattatcttctggaccccaagctcatcatcgctgaaa |
77 |
Q |
| |
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|||||||||||||||||||| | ||||| |||||||||||||| ||||| || || || || ||||||| ||||||| |
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| T |
33965240 |
caattttgtggctccattttcttataaacgttgtatcaggtataatcttttgtactccgaggtcatcatagctgaaa |
33965316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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