View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4449_low_5 (Length: 231)
Name: NF4449_low_5
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4449_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41406588 - 41406797
Alignment:
| Q |
1 |
gaagcctaaactggctcgaaaaccctcgctagaaatcgctctaccgaagaaaactgaatggatccaattcagtaaacgggatccaaaaccggaggcggtt |
100 |
Q |
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| T |
41406588 |
gaagcctaaactggctcgaaaaccctcgctagaaatcgctctaccgaagaaaactgaatggatccaattcagtaaaccggatccaaaaccggaggcggtt |
41406687 |
T |
|
| Q |
101 |
gtccagaagcctgaagcagttaagaaacagcactacagaggagttagacaaagaccatggggaaagttcgccgccgagatccgtgacccgaacaaacgag |
200 |
Q |
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| T |
41406688 |
gtccagaagcctgaagcagttaagaaacagcactacagaggagttagacaaagaccatggggaaagttcgccgccgagatccgtgacccgaacaaacgag |
41406787 |
T |
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| Q |
201 |
gttcaagagt |
210 |
Q |
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|||||||||| |
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| T |
41406788 |
gttcaagagt |
41406797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41399487 - 41399696
Alignment:
| Q |
1 |
gaagcctaaactggctcgaaaaccctcgctagaaatcgctctaccgaagaaaactgaatggatccaattcagtaaacgggatccaaaaccggaggcggtt |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||| |||| |
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| T |
41399487 |
gaagcctaaactgagccgaaaaccatcgctggaaatcgctctaccgaagaagactgagtggatccaattcggtaaacctgatccaaaaccggaggtggtt |
41399586 |
T |
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| Q |
101 |
gtccagaagcctgaagcagttaagaaacagcactacagaggagttagacaaagaccatggggaaagttcgccgccgagatccgtgacccgaacaaacgag |
200 |
Q |
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| T |
41399587 |
gttcagaaaccggaagttgctgagaaacaacactacagaggtgttagacaaagaccatggggaaaattcgccgcggagatccgtgacccgaacaaaagag |
41399686 |
T |
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| Q |
201 |
gttcaagagt |
210 |
Q |
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|||||||||| |
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| T |
41399687 |
gttcaagagt |
41399696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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