View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4449_low_6 (Length: 219)

Name: NF4449_low_6
Description: NF4449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4449_low_6
NF4449_low_6
[»] chr1 (28 HSPs)
chr1 (1-202)||(15009651-15009852)
chr1 (1-202)||(15030749-15030950)
chr1 (1-202)||(15023768-15023969)
chr1 (1-202)||(15001048-15001249)
chr1 (1-202)||(15016054-15016255)
chr1 (1-155)||(15009914-15010068)
chr1 (1-155)||(15031012-15031166)
chr1 (1-150)||(15031161-15031310)
chr1 (1-150)||(14533717-14533866)
chr1 (15-150)||(15036155-15036290)
chr1 (5-150)||(14533577-14533722)
chr1 (47-150)||(15024252-15024355)
chr1 (47-150)||(15031593-15031696)
chr1 (24-165)||(14503102-14503243)
chr1 (50-155)||(15010130-15010235)
chr1 (1-150)||(15023964-15024113)
chr1 (1-150)||(15031305-15031454)
chr1 (25-150)||(15001244-15001367)
chr1 (16-142)||(15016258-15016384)
chr1 (78-150)||(15024108-15024180)
chr1 (78-150)||(15031449-15031521)
chr1 (4-126)||(14523455-14523577)
chr1 (77-150)||(15009847-15009920)
chr1 (77-150)||(15030945-15031018)
chr1 (1-101)||(15036060-15036160)
chr1 (1-144)||(14533861-14534004)
chr1 (5-66)||(14467022-14467083)
chr1 (77-150)||(15010063-15010136)
[»] scaffold0400 (1 HSPs)
scaffold0400 (1-100)||(11532-11631)
[»] scaffold0365 (1 HSPs)
scaffold0365 (1-100)||(12175-12274)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15009852 - 15009651
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||  ||| || || || | |||||| | ||||||||||||||||||||||||| |||||    
T  15009852 aggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagcttcgttaaatttccgatagtgaaaggaattggtccagagagagtattt 15009753  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15009752 tgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 15009653  T
Q  201 ac 202  Q
    ||    
T  15009652 ac 15009651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15030950 - 15030749
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||  ||| || || || | |||||| | ||||||||||||||||||||||||| |||||    
T  15030950 aggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagcttcgttaaatttccgatagtgaaaggaattggtccagagagagtattt 15030851  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15030850 tgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 15030751  T
Q  201 ac 202  Q
    ||    
T  15030750 ac 15030749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15023969 - 15023768
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| | ||| | |||||||||||| |||| ||| |||  ||| |||||||| | |||||| | |||||||||||||||||||||||||||||||    
T  15023969 aggtggaatttctccggagagagcatttgaataaaaatacaattcacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattt 15023870  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 200  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15023869 tgtgaaaggtcaatactatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttcagactag 15023770  T
Q  201 ac 202  Q
    ||    
T  15023769 ac 15023768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15001249 - 15001048
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||  ||| ||||| || | |||||| | ||||||||||||||||||||||||| |||||    
T  15001249 aggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagagtattt 15001150  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||| ||||||||| |||||||    
T  15001149 tgtgaaaggtcaatagtatctaaattaatcaaattacctatggatggtgggattgactcagcgagattgttaaccgacaaatcaagagtttttagactag 15001050  T
Q  201 ac 202  Q
    ||    
T  15001049 ac 15001048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15016255 - 15016054
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| ||||| |||||| |||||||||||||||||| | || | ||||| |||| |||||||| ||||||||||| ||||||||||| |||||||    
T  15016255 aggtggaatttgtccggtgagatcatttgagtaaagatatagtatattgagttttgtcaaatttcctatagtgaaaggaagtggtccagagatattattt 15016156  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattgacccaaagagattgttaatcgacaaattaagagttttgagactag 200  Q
    | |||||||| ||| |||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||    
T  15016155 tctgaaaggttaatagtatccaaattaatcaaattacctatggatagtggtattgatccaaaaagattgttaatcgacaaatcaagagtttttagactag 15016056  T
Q  201 ac 202  Q
    ||    
T  15016055 ac 15016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15010068 - 15009914
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||||||||||||| | |||||| |||||||||| ||||| |||| |||||| | |||| ||||||||||||||||||||||||||    
T  15010068 aggtggaatttgtccagtgagagcatttaaataaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattt 15009969  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattg 155  Q
    |||||||||  ||    ||||||||||||||||||||||||||| ||||| ||||    
T  15009968 tgtgaaagggaaaagtaatccaaattaatcaaattacctatggaaggtggaattg 15009914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15031166 - 15031012
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||||||||||||| | |||||| |||||||||| ||||| |||| |||||| | |||| ||||||||||||||||||||||||||    
T  15031166 aggtggaatttgtccagtgagagcatttaaataaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattt 15031067  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgggattg 155  Q
    |||||||||  ||    ||||||||||||||||||||||||||| ||||| ||||    
T  15031066 tgtgaaagggaaaagtaatccaaattaatcaaattacctatggaaggtggaattg 15031012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 15031310 - 15031161
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| | ||| | |||||||||||| |||| ||| |||  ||| |||||||| | |||||| | |||||||||||||||||||||||||||||||    
T  15031310 aggtggaatttctccggagagagcatttgaataaaaatacaattcacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattt 15031211  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    ||||||||||||||  |||||||||| ||||| ||||||||||| |||||    
T  15031210 tgtgaaaggtcaatantatccaaattgatcaagttacctatggaaggtgg 15031161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 14533717 - 14533866
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||  |||||||||||||||||||| | |||| ||||| |||| | ||| || | |||||| |||||| |||||||||||| |||||| ||||||    
T  14533717 aggtggaagttgtccagtgagagcatttgaatgaagagataatatacttactttcgttaaatttccaacagtggaaggaattggtctagagagtttattt 14533816  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    | |||||||||||| ||||||||||||| ||  ||||||||||| |||||    
T  14533817 tctgaaaggtcaatagtatccaaattaaccaggttacctatggaaggtgg 14533866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 15036290 - 15036155
Alignment:
Q  15 cagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaat 114  Q
    ||||||||| ||||||  |||||  ||||| ||| ||||| |||| |||| | | |||| |||||||||||||||||||||||||| ||||||||| |||    
T  15036290 cagtgagagaatttgataaaagagttaatgcactgagttttgtcaaattttcgatagtggaaggaattggtccagagagattatttagtgaaaggtgaat 15036191  T
Q  115 cgtatccaaattaatcaaattacctatggatggtgg 150  Q
     | ||||||||||||||||||||||||||| |||||    
T  15036190 agaatccaaattaatcaaattacctatggaaggtgg 15036155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 14533577 - 14533722
Alignment:
Q  5 ggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtg 104  Q
    ||||||| ||||||||| | ||||||| ||||  |||||| | ||||||| |||| |||||| | |||| ||||||||||||||||||| ||||||| ||    
T  14533577 ggaatatttccagtgagggaatttgagaaaagtgataatgaattaagttttgtcaaatttccgatagtggaaggaattggtccagagagtttattttctg 14533676  T
Q  105 aaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    |||||| ||| ||||||||||||| ||  ||||||||||| |||||    
T  14533677 aaaggtaaatagtatccaaattaaccatgttacctatggaaggtgg 14533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 15024355 - 15024252
Alignment:
Q  47 ctaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatg 146  Q
    |||||||| |||| |||||| | |||| | |||||||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||| |    
T  15024355 ctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaag 15024256  T
Q  147 gtgg 150  Q
    ||||    
T  15024255 gtgg 15024252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 15031696 - 15031593
Alignment:
Q  47 ctaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatg 146  Q
    |||||||| |||| |||||| | |||| | |||||||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||| |    
T  15031696 ctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaag 15031597  T
Q  147 gtgg 150  Q
    ||||    
T  15031596 gtgg 15031593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 14503243 - 14503102
Alignment:
Q  24 catttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatcgtatccaa 123  Q
    |||||||| |||||| |||| || | ||||| |||| |||||| | |||  ||||||||||||||||||| ||||||||  |||||  ||| | || |||    
T  14503243 catttgagaaaagatttaatatagtgagtttcgtcaaatttccgatagttgaaggaattggtccagagaggttattttgaaaaaggataatagaattcaa 14503144  T
Q  124 attaatcaaattacctatggatggtgggattgacccaaagag 165  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  14503143 attaaccaaattacctatggatggtgggattggcccagagag 14503102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 15010235 - 15010130
Alignment:
Q  50 agtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtg 149  Q
    ||||| |||| |||||| | |||| |||||||||||||||||||||||||||||||||||  ||    |||||||||| |||||||||||||||| ||||    
T  15010235 agttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagggaaaagtaatccaaattagtcaaattacctatggaaggtg 15010136  T
Q  150 ggattg 155  Q
    | ||||    
T  15010135 gaattg 15010130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 15024113 - 15023964
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||  |||||||||||| ||||| |||||||||  ||||| || | |||||| |  ||| ||||||||||||||||||||| ||||    
T  15024113 aggtggaatttgtccagcaagagcatttgagaaaagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15024014  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
      ||| |||| |||   ||||||||| ||||| ||||||||||| |||||    
T  15024013 cttgataggtgaataagatccaaattgatcaagttacctatggaaggtgg 15023964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 15031454 - 15031305
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| |||||||  |||||||||||| ||||| |||||||||  ||||| || | |||||| |  ||| ||||||||||||||||||||| ||||    
T  15031454 aggtggaatttgtccagcaagagcatttgagaaaagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15031355  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
      ||| |||| |||   ||||||||| ||||| ||||||||||| |||||    
T  15031354 cttgataggtgaataagatccaaattgatcaagttacctatggaaggtgg 15031305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 15001367 - 15001244
Alignment:
Q  25 atttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaa 124  Q
    ||||||| ||||||||||| |||  ||||| ||||||||||| |||||| ||||||||||||||||||||   ||||    ||||| ||| |||||||||    
T  15001367 atttgagaaaagatataatttacggagttttgtcatatttccaacagtggaaggaattggtccagagaga--cttttcattaaggtaaatagtatccaaa 15001270  T
Q  125 ttaatcaaattacctatggatggtgg 150  Q
    || ||||| ||||||||||| |||||    
T  15001269 ttgatcaagttacctatggaaggtgg 15001244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 15016384 - 15016258
Alignment:
Q  16 agtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgtgaaaggtcaatc 115  Q
    ||||| || ||||||| ||||| ||||| || | ||||| ||||| ||||| | |||||||||||||||| ||||||||||||| | |||||||| ||      
T  15016384 agtgaaagaatttgagaaaagagataatctaatgagttttgtcatgtttccaatagtgaaaggaattggttcagagagattattgtatgaaaggtaaaga 15016285  T
Q  116 gtatccaaattaatcaaattacctatg 142  Q
    |||| ||||||||| |||||| |||||    
T  15016284 gtatgcaaattaattaaattatctatg 15016258  T

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Target: chr1; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 15024180 - 15024108
Alignment:
Q  78 gaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    |||||||||||||||||| ||||| |||||||| ||| ||||||||||| |||||||| |||||||| |||||    
T  15024180 gaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtgg 15024108  T

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Target: chr1; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 15031521 - 15031449
Alignment:
Q  78 gaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    |||||||||||||||||| ||||| |||||||| ||| ||||||||||| |||||||| |||||||| |||||    
T  15031521 gaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtgg 15031449  T

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Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 14523455 - 14523577
Alignment:
Q  4 tggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattttgt 103  Q
    |||||||| ||||| |||||||||||||  || | |||||  ||| | ||| || | |||||| | |||| |||||| |||||||||||| |||||||||    
T  14523455 tggaatatttccagagagagcatttgagagaaaagataattcacttactttcgttaaatttccgatagtggaaggaagtggtccagagagtttattttgt 14523554  T
Q  104 gaaaggtcaatcgtatccaaatt 126  Q
    |||| |||||| |||||||||||    
T  14523555 gaaaagtcaatagtatccaaatt 14523577  T

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Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 15009920 - 15009847
Alignment:
Q  77 ggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    ||||||||||||||||||| ||||  ||||||||||||  |||||||||| ||||| ||||||||||| |||||    
T  15009920 ggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtgg 15009847  T

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Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 15031018 - 15030945
Alignment:
Q  77 ggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    ||||||||||||||||||| ||||  ||||||||||||  |||||||||| ||||| ||||||||||| |||||    
T  15031018 ggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtgg 15030945  T

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Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 15036160 - 15036060
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| | |||||||||||||||||||||||   |||||  ||| | |||||| | |||||| | |||| ||||||||||||||||||| ||||||    
T  15036160 aggtggaatttttccagtgagagcatttgagtaaattaataattcactcactttggttaaatttccaatagtggaaggaattggtccagagagtttattt 15036061  T
Q  101 t 101  Q
    |    
T  15036060 t 15036060  T

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Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14533861 - 14534004
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||     | ||||| |||| |||||| | |||  |||||| |||||||||||  |||||     
T  14533861 aggtggaatttgtccggtgagagcatttgaggaaagatataacactgtgagttttgtcaaatttccgatagtagaaggaagtggtccagagattttattg 14533960  T
Q  101 tgtgaaaggtcaatcgtatccaaattaatcaaattacctatgga 144  Q
    |  ||||||||||| ||||| ||||| | ||| |||||||||||    
T  14533961 tccgaaaggtcaatagtatctaaattgaccaatttacctatgga 14534004  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 14467083 - 14467022
Alignment:
Q  5 ggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcc 66  Q
    ||||||| ||||||||| |||||||||||||||||||| | | ||||||| |||| ||||||    
T  14467083 ggaatatttccagtgagggcatttgagtaaagatataacgaattaagttttgtcaaatttcc 14467022  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 15010136 - 15010063
Alignment:
Q  77 ggaattggtccagagagattattttgtgaaaggtcaatcgtatccaaattaatcaaattacctatggatggtgg 150  Q
    ||||||||||||||||||| ||||  |||||||  |||  |||||||||| ||||| ||||||| ||| |||||    
T  15010136 ggaattggtccagagagatgatttcttgaaagggaaatattatccaaattgatcaagttacctacggaaggtgg 15010063  T

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Target: scaffold0400 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11631 - 11532
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| ||||| ||||||||||||||| ||||| ||||  |  | ||||| |||| |||||| | ||||  |||||||||||| ||||| ||||||    
T  11631 aggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 11532  T

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Target: scaffold0365 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 12274 - 12175
Alignment:
Q  1 aggtggaatatgtccagtgagagcatttgagtaaagatataatgtactaagtttggtcatatttcctacagtgaaaggaattggtccagagagattattt 100  Q
    ||||||||| ||||| ||||||||||||||| ||||| ||||  |  | ||||| |||| |||||| | ||||  |||||||||||| ||||| ||||||    
T  12274 aggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 12175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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