View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4450-Insertion-1 (Length: 989)

Name: NF4450-Insertion-1
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4450-Insertion-1
NF4450-Insertion-1
[»] chr5 (7 HSPs)
chr5 (7-857)||(27245561-27246433)
chr5 (583-747)||(11245324-11245491)
chr5 (583-742)||(22867974-22868137)
chr5 (857-988)||(27246505-27246640)
chr5 (583-701)||(6967337-6967456)
chr5 (648-739)||(17535766-17535857)
chr5 (475-563)||(6967484-6967572)
[»] chr6 (16 HSPs)
chr6 (583-749)||(7201046-7201213)
chr6 (583-742)||(26497851-26498013)
chr6 (583-749)||(28847758-28847926)
chr6 (583-812)||(10669905-10670136)
chr6 (583-742)||(609616-609777)
chr6 (645-742)||(1112493-1112590)
chr6 (633-742)||(1522594-1522705)
chr6 (610-741)||(17364203-17364337)
chr6 (583-662)||(3361867-3361947)
chr6 (583-740)||(29288418-29288578)
chr6 (686-742)||(3361950-3362006)
chr6 (583-640)||(33986463-33986521)
chr6 (936-986)||(24204503-24204552)
chr6 (702-742)||(17902287-17902327)
chr6 (480-565)||(26498038-26498123)
chr6 (482-516)||(609849-609883)
[»] chr2 (7 HSPs)
chr2 (480-812)||(2103916-2104254)
chr2 (585-748)||(44259815-44259980)
chr2 (642-742)||(26290419-26290519)
chr2 (645-742)||(5868979-5869076)
chr2 (653-742)||(30707048-30707137)
chr2 (645-742)||(18242144-18242241)
chr2 (583-618)||(30706986-30707021)
[»] chr7 (14 HSPs)
chr7 (583-742)||(38190265-38190425)
chr7 (583-742)||(33540093-33540254)
chr7 (583-742)||(44767320-44767480)
chr7 (583-812)||(19468252-19468482)
chr7 (584-742)||(27224282-27224439)
chr7 (624-811)||(40230871-40231058)
chr7 (584-742)||(22317680-22317839)
chr7 (645-742)||(39608142-39608239)
chr7 (652-747)||(14802681-14802776)
chr7 (652-747)||(15249674-15249769)
chr7 (464-516)||(38190500-38190552)
chr7 (475-531)||(27224501-27224557)
chr7 (475-566)||(40230748-40230838)
chr7 (478-531)||(19468540-19468593)
[»] chr1 (15 HSPs)
chr1 (583-742)||(24892008-24892169)
chr1 (583-742)||(5882526-5882686)
chr1 (629-742)||(50509774-50509887)
chr1 (645-742)||(26687691-26687788)
chr1 (602-742)||(23688380-23688520)
chr1 (645-742)||(7380372-7380469)
chr1 (653-742)||(9672504-9672593)
chr1 (587-742)||(50262420-50262582)
chr1 (652-744)||(29864666-29864758)
chr1 (583-728)||(27564964-27565107)
chr1 (583-642)||(9672366-9672427)
chr1 (475-566)||(5882710-5882801)
chr1 (481-531)||(23688635-23688685)
chr1 (480-566)||(9672256-9672342)
chr1 (630-671)||(9672448-9672489)
[»] chr4 (8 HSPs)
chr4 (583-742)||(16061450-16061612)
chr4 (583-742)||(38138700-38138860)
chr4 (645-749)||(6087039-6087143)
chr4 (646-742)||(6131956-6132052)
chr4 (658-742)||(18886184-18886268)
chr4 (579-741)||(6166329-6166475)
chr4 (646-742)||(32727972-32728068)
chr4 (480-742)||(36441084-36441346)
[»] chr8 (13 HSPs)
chr8 (480-742)||(9946544-9946815)
chr8 (583-742)||(33474547-33474707)
chr8 (583-742)||(24534836-24534996)
chr8 (601-742)||(44004316-44004457)
chr8 (583-742)||(21466885-21467052)
chr8 (583-748)||(6976555-6976716)
chr8 (645-749)||(13751432-13751537)
chr8 (583-736)||(13569255-13569403)
chr8 (658-737)||(1738683-1738762)
chr8 (645-710)||(45231609-45231674)
chr8 (648-742)||(31661311-31661405)
chr8 (470-566)||(6976740-6976836)
chr8 (475-531)||(24534721-24534777)
[»] chr3 (5 HSPs)
chr3 (583-744)||(42624696-42624859)
chr3 (623-748)||(54561082-54561208)
chr3 (676-742)||(7741874-7741939)
chr3 (696-745)||(19902962-19903011)
chr3 (704-742)||(7650520-7650558)
[»] scaffold0005 (1 HSPs)
scaffold0005 (624-742)||(284268-284386)
[»] scaffold0125 (1 HSPs)
scaffold0125 (658-742)||(5771-5855)


Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 7 - 857
Target Start/End: Original strand, 27245561 - 27246433
Alignment:
Q  7 agctaagagatcaaaacatccctctcaatgtgagagaatgtcaagtattatcaaaacactattcttctatatgagggat--tttttaggatttttgtaag 104  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27245561 agctaagagatcaaaacatccttctcaatgtgagagaatgtcaagtattatcaaaacactattcttctatatgagggatattttttaggatttttgtaag 27245660  T
Q  105 ggttcttgttctaatatccattattaaacgtttgagagttgaagtaagtg--gttatttcctcattaacctcatcattcccatataattctctaattatg 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  27245661 ggttcttgttctaatctccattattaaacgtttgagagttgaagtaagtgtggttatttcctcattaacctcaacattcccatataattttctaattatg 27245760  T
Q  203 acatcgtagaattcttctttgatttgcatcataggagtccatctcttgtggtatgtgagttcattgatcgtc-------------------caaaaccat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||    
T  27245761 acatcgtagaattcttctttgatttgcatcataggagtccatctcttgtggtatgtgagttcattgatcgtccaaccaactagcaaactttcaaaaccat 27245860  T
Q  284 ataacatttggctagcaatagccatgatttcctagttcttcttgactcttgcttcttttttaaccttttaggcttatttctcagaagttagaggttcaaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27245861 ataacatttggctagcaatagccatgatttcctagttcttcttgactcttgcttcttttttaaccttttaggcttatttctcagaagttagaggttcaaa 27245960  T
Q  384 agattttaacgtttgatttttggtggtgatggtttgacaatttctttcttatcatcattatctaatcaaatattgatagacagtgccgtaatttgaggag 483  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||    
T  27245961 agattttaacgtttgatttttggtggtgatggtttgacaaattctttcttatcatcattatctaatcaaatattgataggcagggccgttctttgaggag 27246060  T
Q  484 tgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactcnnnnnnnnnnnntaaac 583  Q
    ||||||||||| ||||||| ||||||||||||||| || ||||||| |       ||||||||||||||||||||||||||||            |||||    
T  27246061 tgcaaagagct-aaccgagttggacctcccaaaatgataggcctcatgaaaaaaattattgctcaatatccccacccccactcaaaaaagaaaaataaac 27246159  T
Q  584 atgtttcaatttctaagtaaaaaatcatgttccatgttctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggc 683  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27246160 atgtttcaatttctaagtaaaaaatcatgtttcatgttctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcgatggc 27246259  T
Q  684 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtgcgnnnnnnnnattaagggctaatttttactattaga 783  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||| | | |||||||||||||||    
T  27246260 taataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaattgtgcgttttttttattaagtgtttatttttactattaga 27246359  T
Q  784 gtcgagcctctcgtttcatagggacggccatgttgataggatcaccctttggtgccttatattttgaaccatat 857  Q
    ||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  27246360 gtcgagcctcctgtttcatagggacgaccctgttgataggatcaccctttggtgccttatattttgaaccatat 27246433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 583 - 747
Target Start/End: Original strand, 11245324 - 11245491
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa-tcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    |||||||||||||  |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  11245324 catgtttcaattttgaagtaaaaaaatcatgttccatgtttctatttctaagtttaaaaacacatctttagtaaaagtaattgctaattttgatttcagt 11245423  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttt-aaaaaattgtg 747  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11245424 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttgaaaaaattgtg 11245491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 583 - 742
Target Start/End: Original strand, 22867974 - 22868137
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa---tcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcg 678  Q
    |||||| ||||||||||||||||||   |||||||||||||| |||||||||||||  ||||||| |||||||||||| |||||||||||| |||||||     
T  22867974 catgttgcaatttctaagtaaaaaaaaatcatgttccatgtttctatttctaagttttaaaacacgtctttagtaaaaataattgctaattatgatttca 22868073  T
Q  679 gtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  22868074 gtggctaataatcattatacgagtgtttttttcaatttaaatggaagattaatcttttaaaaaa 22868137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 857 - 988
Target Start/End: Original strand, 27246505 - 27246640
Alignment:
Q  857 ttttagtcgagcgagagcgtaagcttttgactgtggcggattgtgaagttgcttgtataaagatgtttacattttctta-----gttttgattgatgtcg 951  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||     ||||||||||||||||    
T  27246505 ttttagttgagcgagagcgtaagcttttgactgtggcggattgtgaagttgcttgtataaatatgttgatattatcttagttttgttttgattgatgtcg 27246604  T
Q  952 ttagttttttgtacaacaaccgttcattctagattgc 988  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  27246605 ttag-tttttgtacaacacccgttcattctagattgc 27246640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 583 - 701
Target Start/End: Complemental strand, 6967456 - 6967337
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||| ||| || |||||||||||||||||||||||| ||||| |||    
T  6967456 catgtttcaatttttaagtaaaaaatcatgtttcatgtttctatttataagttaaaaagcacgtccttagtaaaagtaattgctaattttaatttcagtg 6967357  T
Q  682 gctaataatcattatacgag 701  Q
    ||||||||||||||||||||    
T  6967356 gctaataatcattatacgag 6967337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 648 - 739
Target Start/End: Complemental strand, 17535857 - 17535766
Alignment:
Q  648 ttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaa 739  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||||||    
T  17535857 ttagtaaaaataactgctaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaa 17535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 475 - 563
Target Start/End: Complemental strand, 6967572 - 6967484
Alignment:
Q  475 tttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccaccccca 563  Q
    |||| |||||||||||||||||| |||| ||| ||||||||| | || |||||||||       |||||| ||||||||||||||||||    
T  6967572 tttggggagtgcaaagagctcaatcgagttgggcctcccaaagtgattggcctcaagaaaaaaattattgttcaatatccccaccccca 6967484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 583 - 749
Target Start/End: Original strand, 7201046 - 7201213
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||    
T  7201046 catgtttcaatttctaagtcaaaaatcatgtttcatgtttctatttctaagttaaaaaacacgtctttagtaaaaataattgctaattttgatttcagtg 7201145  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtgcg 749  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7201146 gctaataatcattatacaagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtgcg 7201213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 26498013 - 26497851
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa-tcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26498013 catgtttcaatttctaaataaaaaaatcatgttccatgtttctatttctaagttaaaaaacacgtctttagtaaaaataattgctaattttgatttcggt 26497914  T
Q  681 ggctaataatcattatacgagtgtta-ttttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26497913 ggctaataatcattatacgtgtgttatttttcaatttaaatagaagattaatcttttaaaaaa 26497851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 583 - 749
Target Start/End: Complemental strand, 28847926 - 28847758
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa-tcatgttccatgttct-atttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  28847926 catgtttcaatttctaagtaaaaaaatcatgttccatgtttttatttcaaagttaaaaaacacatctttagtaaaaataattgttaattttgatttcagt 28847827  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtgcg 749  Q
    ||||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  28847826 ggctaataatcattatacatgtgttatttttaatttaaatagaggattaatcttttaaaaaattatgcg 28847758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 583 - 812
Target Start/End: Original strand, 10669905 - 10670136
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||| |||    
T  10669905 catgttttaatttctaagtaaaaaatcatgttccatgtttctatttctaaattaaaaaacacatttttagtaaaactaattactaattttgatttcagtg 10670004  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatc--ttttaaaaaattgtgcgnnnnnnnnattaagggctaatttttactat 779  Q
     |||||||||||||||||  ||||||||| |||||||||||||||||| ||  |||| ||||||||||          |||||||||  |||||||||||    
T  10670005 actaataatcattatacggatgttatttttaatttaaatagaagattattctttttttaaaaattgtg-tttttttttattaagggcctatttttactat 10670103  T
Q  780 tagagtcgagcctctcgtttcatagggacggcc 812  Q
     |||||||||||||  |||||||||||||||||    
T  10670104 gagagtcgagcctccagtttcatagggacggcc 10670136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 609777 - 609616
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa-tcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    ||||||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||||||| |||| ||||||| |||||||||||||||| ||   |    
T  609777 catgtttcaatttataagtaaaaaaatcatgtttcatgtttctatttccaagttaaaaaacacctcttcagtaaaactaattgctaattttgactttcat 609678  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  609677 ggctaataatcattatacgagtgttattttcaatataaatagaagattaaccttttaaaaaa 609616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 645 - 742
Target Start/End: Complemental strand, 1112590 - 1112493
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1112590 tctttagtaaaaataattgctaattttaatttcggtggctaataaccattatacgaatgttattttcaatttaaatagaagattaatcttttaaaaaa 1112493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 633 - 742
Target Start/End: Original strand, 1522594 - 1522705
Alignment:
Q  633 ttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcat--tatacgagtgttattttcaatttaaatagaagattaa 730  Q
    |||| |||||| |||||| ||||| |||| ||||||||| ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  1522594 ttaacaaacacgtctttaataaaaataatagctaattttaatttcggtggctaataaccatattatacgagtgttattttcaatttaaatagaagattaa 1522693  T
Q  731 tcttttaaaaaa 742  Q
    ||| ||||||||    
T  1522694 tctcttaaaaaa 1522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 610 - 741
Target Start/End: Original strand, 17364203 - 17364337
Alignment:
Q  610 atgttccatgtt-ctatttctaagttaaaaaacacatct---ttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgtt 705  Q
    |||||||||||| |||||||||||| |||||| || | |   ||| ||||| |||||||||||||||||| |||||||||||||||||||||||  ||||    
T  17364203 atgttccatgtttctatttctaagtaaaaaaaaacgtgtcccttaataaaaataattgctaattttgatt-cggtggctaataatcattatacggctgtt 17364301  T
Q  706 attttcaatttaaatagaagattaatcttttaaaaa 741  Q
     ||||||||||||||||||||||  |||||||||||    
T  17364302 cttttcaatttaaatagaagattgctcttttaaaaa 17364337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 583 - 662
Target Start/End: Original strand, 3361867 - 3361947
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatg-ttctatttctaagttaaaaaacacatctttagtaaaagtaatt 662  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  |||||||||||| |||||    
T  3361867 catgtttcaatttctaagtaaaaaatcatgttccatgtttctatttctaagttaaaaatcatgtctttagtaaaaataatt 3361947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 583 - 740
Target Start/End: Complemental strand, 29288578 - 29288418
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctt---tagtaaaagtaattgctaattttgatttcg 678  Q
    |||||| | |||||||||||||||  ||||||||||||| |||||||||| | |||||| || | ||   |||||||| ||| |  ||||||| ||||||    
T  29288578 catgttactatttctaagtaaaaacacatgttccatgtttctatttctaaataaaaaaa-acttgttccttagtaaaaataaatattaattttaatttcg 29288480  T
Q  679 gtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaa 740  Q
    || ||||||||| ||||||||  |||| |||||||||||||||||||||| |||||||||||    
T  29288479 gttgctaataattattatacggatgttcttttcaatttaaatagaagattgatcttttaaaa 29288418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 686 - 742
Target Start/End: Original strand, 3361950 - 3362006
Alignment:
Q  686 ataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  3361950 atattcattatacaagtgttatttttaatttaaatagaagattagtcttttaaaaaa 3362006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 583 - 640
Target Start/End: Original strand, 33986463 - 33986521
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatg-ttctatttctaagttaaaaaa 640  Q
    |||||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||    
T  33986463 catgtttcaatttctaagtaaaaaattatgctccatgtttttatttctaagttaaaaaa 33986521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 986
Target Start/End: Original strand, 24204503 - 24204552
Alignment:
Q  936 gttttgattgatgtcgttagttttttgtacaacaaccgttcattctagatt 986  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  24204503 gttttgattgatgtcattagtttt-tgtacaacacccgttcattctagatt 24204552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 702 - 742
Target Start/End: Complemental strand, 17902327 - 17902287
Alignment:
Q  702 tgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  17902327 tgttattttcaatttaaatagaagattattctttttaaaaa 17902287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 26498123 - 26498038
Alignment:
Q  480 ggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccact 565  Q
    |||||||||||| |||||  ||||||| | || |||| | ||||||||||||       |||||||||||||||||||||||||||    
T  26498123 ggagtgcaaagatctcaattgagctgggcttctcaaagtgatgggcctcaagaaaaaaattattgctcaatatccccacccccact 26498038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 609883 - 609849
Alignment:
Q  482 agtgcaaagagctcaaccgagctggacctcccaaa 516  Q
    ||||||||||||||||||||||||| |||||||||    
T  609883 agtgcaaagagctcaaccgagctgggcctcccaaa 609849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 3e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 480 - 812
Target Start/End: Original strand, 2103916 - 2104254
Alignment:
Q  480 ggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactcnnnnnnnnnnnnt 579  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||       ||||||||||||||||||||||||||||            |    
T  2103916 ggagtgcaaagagctcaaccgagctggacctcccaaagtgatgggcctcaagaaaaaaattattgctcaatatccccacccccactcaaaaaagaaaatt 2104015  T
Q  580 aaacatgtttca-------atttctaagtaaaaaatcatgttccatgttc-tatttctaagttaaaaaacacatctttagtaaaagtaattgctaatttt 671  Q
    ||||||||||||       ||||||||||||||| ||||||| ||||||  |||||||||||||||||| || ||||| |||||| ||||||||||||||    
T  2104016 aaacatgtttcatgtttcaatttctaagtaaaaa-tcatgtttcatgtttatatttctaagttaaaaaatacgtctttcgtaaaaataattgctaatttt 2104114  T
Q  672 gatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtgcgnnnnnnnnattaagggctaatt 771  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |  |        |||||||||| |||    
T  2104115 gattttggtggctaataatcattagactagtgttattttcaatttaaatagaagattaatcttttaaaaaaat-tatggtttttttattaagggcttatt 2104213  T
Q  772 tttactattagagtcgagcctctcgtttcatagggacggcc 812  Q
    ||||| || |||| ||||||||| |||||||||||||||||    
T  2104214 tttaccatgagagccgagcctctagtttcatagggacggcc 2104254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 585 - 748
Target Start/End: Complemental strand, 44259980 - 44259815
Alignment:
Q  585 tgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggc 683  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||    
T  44259980 tgtttcaatttctaagtaaaaaatcatgttttatgtttctatttctaagtttaaaaacacgtctttagtaaaaataattgctaattttgatttcagtggc 44259881  T
Q  684 taataatcattatacgagtgttattttcaatttaaatagaagattaatc-ttttaaaaaattgtgc 748  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  44259880 taataataattatacgagtgtaattttcaatttaactagaagattaatctttttaaaaaattgtgc 44259815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 642 - 742
Target Start/End: Original strand, 26290419 - 26290519
Alignment:
Q  642 acatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 741  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290419 acatctttagtaaaaataattgctaattttaatttcgatggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 26290518  T
Q  742 a 742  Q
    |    
T  26290519 a 26290519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 645 - 742
Target Start/End: Complemental strand, 5869076 - 5868979
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| ||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5869076 tctttagtaaaaataatttctaattttaattttggtggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 5868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 653 - 742
Target Start/End: Original strand, 30707048 - 30707137
Alignment:
Q  653 aaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30707048 aaaaataattgctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaa 30707137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 645 - 742
Target Start/End: Complemental strand, 18242241 - 18242144
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18242241 tctttagtaaaaataattgctaattttaattttggtggttaataaccattatacgagtgttattttcgatttaaatagaagattaatcttttaaaaaa 18242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 618
Target Start/End: Original strand, 30706986 - 30707021
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccat 618  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30706986 catgtttcaatttttaagtaaaaaatcatgttccat 30707021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 7e-64; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 38190425 - 38190265
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgttct-atttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  38190425 catgtttcaatttctaagtaaaaaatcatgtttcatgtttttatttctaagttaaaaaacacgtctttagtaaaaataatttctaattttgattttggtg 38190326  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38190325 gctaataatcattatacgagtgttattttcaatttaaatagaatattaatcttttaaaaaa 38190265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 33540254 - 33540093
Alignment:
Q  583 catgtttcaatttctaagtaaaaaa-tcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||  |||||||||||| |||||||||||||||||||| ||    
T  33540254 catgtttcaatttctaagtaaaaaaatcatgttccatgtttcaatttctaagttaaaaaacaggtctttagtaaaaataattgctaattttgatttcagt 33540155  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33540154 ggttaatcatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 33540093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 44767480 - 44767320
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||  | |||||||||| |||||||||||||||||||||||     
T  44767480 catgtttcaatttctaagtaaaaaatcacattccatgtttctatttctaagttaaaaaacatgtatttagtaaaaataattgctaattttgatttcggta 44767381  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44767380 actaataatcattatacgagtgttattttcaatttaaatagaagattaatcttataaaaaa 44767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 583 - 812
Target Start/End: Complemental strand, 19468482 - 19468252
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| || |||||||||| |||||||||||||  |||| ||||    
T  19468482 catgtttcaatttctaagtaaaaaatcatgttccatatttctatttctaagttaaaatacatatttttagtaaaaataattgctaatttatattt-ggtg 19468384  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaa-aaaattgtgcgnnnnnnnnattaagggctaatttttactatt 780  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||         ||||| |||| |||||||||||     
T  19468383 gctaataatcattatacgaatgttattttcaatttaaataaaagattaatcttttaaaaaaattgtgcatttttattattaaaggcttatttttactatg 19468284  T
Q  781 agagtcgagcctctcgtttcatagggacggcc 812  Q
    |||||||||||||   ||| ||||||||||||    
T  19468283 agagtcgagcctccgattttatagggacggcc 19468252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 584 - 742
Target Start/End: Complemental strand, 27224439 - 27224282
Alignment:
Q  584 atgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtgg 682  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||     
T  27224439 atgtttcaatttctaagtaaaaaatcatgttgcatgtttctatttctaagttaaaaaacatgtcttcagtaaaaataattgctaattttgatttcggtga 27224340  T
Q  683 ctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  27224339 ctaataatcattatacgagtgttattttc--tttaaatagaagattaatcttataaaaaa 27224282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 624 - 811
Target Start/End: Original strand, 40230871 - 40231058
Alignment:
Q  624 atttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaataga 723  Q
    |||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40230871 atttctaagttaaaaaacacgtcttt-gtaaaaataattgttaattttgatttcggtggctaataatcattatacgagtgttattctcaatttaaataga 40230969  T
Q  724 agattaatcttttaaaaa-attgtgcgnnnnnnnnattaagggctaatttttactattagagtcgagcctctcgtttcatagggacggc 811  Q
    |||||||||||||||||| ||||||          |||||| ||| ||||||||||| |||||||||||||| |||||||||| |||||    
T  40230970 agattaatcttttaaaaatattgtgaatgttttttattaagtgcttatttttactatgagagtcgagcctctagtttcataggaacggc 40231058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 584 - 742
Target Start/End: Complemental strand, 22317839 - 22317680
Alignment:
Q  584 atgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtgg 682  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||| |||||||| ||||| |||||||||||||| |||     
T  22317839 atgtttcaatttctaagtaaaaaatcatgtttcatgtttctatttataagttaaaaaacacgtctgtagtaaaaataatttctaattttgatttcagtga 22317740  T
Q  683 ctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  22317739 ctaataataattatacgagtagtattttcaatttaaatagaagatgaatcttttaaaaaa 22317680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 645 - 742
Target Start/End: Original strand, 39608142 - 39608239
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  39608142 tctttagtaaaaataattgttaattttaatttcggtggctaataacaattataccagtgttattttcaatttaaatagaagattaatctcttaaaaaa 39608239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 747
Target Start/End: Original strand, 14802681 - 14802776
Alignment:
Q  652 taaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtg 747  Q
    ||||| |||||| |||||||||||||| ||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||||||||||||||    
T  14802681 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 14802776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 747
Target Start/End: Original strand, 15249674 - 15249769
Alignment:
Q  652 taaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtg 747  Q
    ||||| |||||| |||||||||||||| ||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||||||||||||||    
T  15249674 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 15249769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 38190552 - 38190500
Alignment:
Q  464 cagtgccgtaatttgaggagtgcaaagagctcaaccgagctggacctcccaaa 516  Q
    |||||||||  |||| ||||||||||||||||||||||||||| |||||||||    
T  38190552 cagtgccgttctttggggagtgcaaagagctcaaccgagctgggcctcccaaa 38190500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 475 - 531
Target Start/End: Complemental strand, 27224557 - 27224501
Alignment:
Q  475 tttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaag 531  Q
    ||||||||||||||||||||||| |||| ||| ||| | ||||| ||||||||||||    
T  27224557 tttgaggagtgcaaagagctcaatcgagttgggccttcaaaaatgatgggcctcaag 27224501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 475 - 566
Target Start/End: Original strand, 40230748 - 40230838
Alignment:
Q  475 tttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactc 566  Q
    |||||||||||||||||| | |||||| ||||  |||| ||| | ||||||||||||       ||||||||||||||||| ||||||||||    
T  40230748 tttgaggagtgcaaagagtttaaccgaactgggtctcc-aaagtgatgggcctcaagaaaaaaattattgctcaatatccctacccccactc 40230838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 531
Target Start/End: Complemental strand, 19468593 - 19468540
Alignment:
Q  478 gaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaag 531  Q
    |||||||||||||||||||||||||||||  || ||||| | ||||| ||||||    
T  19468593 gaggagtgcaaagagctcaaccgagctgggtcttccaaagtgatgggtctcaag 19468540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 1e-59; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 24892169 - 24892008
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaa-cacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |||||||| ||| |||    
T  24892169 catgtttcaatttctaagtaaaaaatcaggttccatgtttctatttctaagttaaaaaagcacgtctttagtaaaaataattgttaattttggttttggt 24892070  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24892069 ggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 24892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 5882686 - 5882526
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||  |||||||||||||||||    
T  5882686 catgtttcaatttctaagtaaaaaatcatgttccatgtttcaatttctaagttaaaaaacacgtctttagtaaaaataattattaattttgatttcggtg 5882587  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    | ||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  5882586 gttaataattattatacgagcgttattttcaattttaatagaagattaatctttaaaaaaa 5882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 629 - 742
Target Start/End: Original strand, 50509774 - 50509887
Alignment:
Q  629 taagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagatt 728  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50509774 taagttaaaaaacacgtctttagtaaaaataattgctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaatagaaaatt 50509873  T
Q  729 aatcttttaaaaaa 742  Q
    ||||||||||||||    
T  50509874 aatcttttaaaaaa 50509887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 645 - 742
Target Start/End: Complemental strand, 26687788 - 26687691
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26687788 tctttagtaaaaataattgttaattttaatttcggtggttaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 26687691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 602 - 742
Target Start/End: Complemental strand, 23688520 - 23688380
Alignment:
Q  602 aaaaaatcatgttccatgttct-atttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacga 700  Q
    ||||||||||||||||| || | || ||||||||||||||||| | |||||||||| |||||| ||||||||||||  ||| | |||||| |||||||||    
T  23688520 aaaaaatcatgttccatatttttatgtctaagttaaaaaacacgt-tttagtaaaaataattgttaattttgattttagtgacaaataattattatacga 23688422  T
Q  701 gtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  23688421 gtgttattttcaatttaaatagaagattattcttttaaaaaa 23688380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 645 - 742
Target Start/End: Complemental strand, 7380469 - 7380372
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7380469 tctttagtaaaaataattgctaattttaatttcggtgactaataaccataatatgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 7380372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 653 - 742
Target Start/End: Original strand, 9672504 - 9672593
Alignment:
Q  653 aaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9672504 aaaaataattgctaattttgatttcgatggctaataatcattatacgagtgttattttaaatttaaatagaagattaatctttaaaaaaa 9672593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 587 - 742
Target Start/End: Original strand, 50262420 - 50262582
Alignment:
Q  587 tttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggcta 685  Q
    |||| |||||||||||||||| |||||| |||||| |||||||||||| ||||||||| || |||  |||| ||||||||||||||||||  ||||| ||    
T  50262420 tttctatttctaagtaaaaaaacatgtttcatgtttctatttctaagtaaaaaaacacgtccttaaaaaaaataattgctaattttgattatggtggtta 50262519  T
Q  686 a-------taatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |       |||||||||||||| | |||||||||||||||||||||||||| |||||| |||||    
T  50262520 ataatcattaatcattatacga-tattattttcaatttaaatagaagattattctttttaaaaa 50262582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 652 - 744
Target Start/End: Complemental strand, 29864758 - 29864666
Alignment:
Q  652 taaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaatt 744  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||||||||||  |||||| |||||||    
T  29864758 taaaaataattgctaattttaattttggtggctaataatcattatactgatgttattttcaatttaaatagaagattgttctttttaaaaatt 29864666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 27564964 - 27565107
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatg-ttctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    |||||||| |||| ||||||||||| ||||||| ||| |||||||| |||| |||||||||  || |||||||||  ||||| ||||||| ||||  |||    
T  27564964 catgtttctatttttaagtaaaaaaacatgttctatgtttctatttttaag-taaaaaacatgtccttagtaaaa-aaattgttaattttaattttagtg 27565061  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagatt 728  Q
    | ||||||||||||||| | |||||||||||||||||||| ||||||    
T  27565062 gttaataatcattatacca-tgttattttcaatttaaataaaagatt 27565107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 583 - 642
Target Start/End: Original strand, 9672366 - 9672427
Alignment:
Q  583 catgtttcaatttctaagt-aaaaaatcatgttccatg-ttctatttctaagttaaaaaaca 642  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||    
T  9672366 catgtttcaatttctaagtaaaaaaatcatgttccatgcttttatttttaagttaaaaaaca 9672427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 475 - 566
Target Start/End: Complemental strand, 5882801 - 5882710
Alignment:
Q  475 tttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactc 566  Q
    |||| |||||| |||||  ||||||||||||  ||||||| | | ||||||||||||       ||||||||||||||||||||||||||||    
T  5882801 tttggggagtgtaaagaattcaaccgagctgagcctcccagagtgatgggcctcaagaaaaaaattattgctcaatatccccacccccactc 5882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 23688685 - 23688635
Alignment:
Q  481 gagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaag 531  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||| ||||||    
T  23688685 gagtgcaaagagttcaaccgagctgggcctcccaaaatgatgggactcaag 23688635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 480 - 566
Target Start/End: Original strand, 9672256 - 9672342
Alignment:
Q  480 ggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactc 566  Q
    |||||| |||||| |||||||||| || ||||| ||| | | ||||||||||       ||||||||||||||||||| ||||||||    
T  9672256 ggagtgtaaagagttcaaccgagcagggcctcctaaagtgacgggcctcaagaaaaaaattattgctcaatatccccatccccactc 9672342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 9672448 - 9672489
Alignment:
Q  630 aagttaaaaaacacatctttagtaaaagtaattgctaatttt 671  Q
    |||||| ||||||| |||||||||||| ||||||||||||||    
T  9672448 aagttataaaacacgtctttagtaaaaataattgctaatttt 9672489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 7e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 16061612 - 16061450
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaa-cacatctttagtaaaag-taattgctaattttgatttcgg 679  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16061612 catgtttcaatttctaagtaaaaaatcaggttccatgtttctatttctaagttaaaaaagcacgtctttagtaaaaaataattgctaattttgatttcgg 16061513  T
Q  680 tggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16061512 tggctaataaccattatacaagtgttattttcaatttaaatagaagattgatcttttaaaaaa 16061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 583 - 742
Target Start/End: Original strand, 38138700 - 38138860
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    |||| |||||||||||||||||||||||| || |||||| || |||||||||||| |||||  |||||||||||| |||||| | |||||||||| || |    
T  38138700 catgattcaatttctaagtaaaaaatcatatttcatgtttctttttctaagttaagaaacatgtctttagtaaaaataattgttgattttgattttgggg 38138799  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    | |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  38138800 gttaataatcattatacgagtgttattttcaatttaaataaaatattaatcttttaaaaaa 38138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 645 - 749
Target Start/End: Complemental strand, 6087143 - 6087039
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaatt 744  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6087143 tctttagtaaaaataattgctaattttaatttcggtggctaataaccattatacgagtgttattttcaatttaaatataagattaatattttaaaaaatt 6087044  T
Q  745 gtgcg 749  Q
    |||||    
T  6087043 gtgcg 6087039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 646 - 742
Target Start/End: Original strand, 6131956 - 6132052
Alignment:
Q  646 ctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6131956 ctttagtaaaaataattactaattttaatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttttaaaaa 6132052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 658 - 742
Target Start/End: Original strand, 18886184 - 18886268
Alignment:
Q  658 taattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18886184 taattgctaattttaatttcggtggataataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 18886268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 579 - 741
Target Start/End: Original strand, 6166329 - 6166475
Alignment:
Q  579 taaacatgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttc 677  Q
    |||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||                 |||||  |||||||||||||    
T  6166329 taaacatgtttcaatttctatgtaaaaaatcatgtttcatatttctatttctaagttaaaaaa-----------------taatttttaattttgatttc 6166411  T
Q  678 ggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 741  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6166412 ggtggctaataatcattatacgagtgttattttaaatttaaatagaagattaatcttttaaaaa 6166475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 646 - 742
Target Start/End: Complemental strand, 32728068 - 32727972
Alignment:
Q  646 ctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||| |||||| ||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32728068 ctttagtaaaaataattgttaattttaattttggtggctaataaccattataggagtgttattttcaatttaaatagaagattaatcttttaaaaaa 32727972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 480 - 742
Target Start/End: Complemental strand, 36441346 - 36441084
Alignment:
Q  480 ggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactcnnnnnnnnnnnnt 579  Q
    |||||||||||||||||||||||||||  |||||||| | ||||||||||||       |||||| ||||||||| |||||||||||            |    
T  36441346 ggagtgcaaagagctcaaccgagctgggtctcccaaagtgatgggcctcaagaaaaaaattattgttcaatatccacacccccactcaaaaaagaaaaat 36441247  T
Q  580 aaacatgtttca-------atttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaatttt 671  Q
    ||||||||||||       ||||| ||||||||| |||||||| ||||| ||||||  ||||      |||  ||||| |||||| ||||||||||||||    
T  36441246 aaacatgtttcatgtttcaatttccaagtaaaaa-tcatgttctatgtttctattttcaagt------acatgtcttt-gtaaaaataattgctaatttt 36441155  T
Q  672 gatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaaga-ttaatcttttaaaaaa 742  Q
    |||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  36441154 gatttcagtggctaata-taattatacgagtgttattttcagtttaaatagaagatttaatctttaaaaaaa 36441084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 480 - 742
Target Start/End: Original strand, 9946544 - 9946815
Alignment:
Q  480 ggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactcnnnnnnnnnnnnt 579  Q
    |||||||||||||||||||||||||||| |||| ||| | ||||||||||||       | ||||||||||||||||||||||||||            |    
T  9946544 ggagtgcaaagagctcaaccgagctggatctcctaaagtgatgggcctcaagaaaaaaatcattgctcaatatccccacccccactcaaaaagaaaac-t 9946642  T
Q  580 aaacatgtttca-------atttctaagtaaaaaa-tcatgttccatgtt-ctatttctaagttaaaaaa-cacatctttagtaaaagtaattgctaatt 669  Q
    ||||||||||||       |||||||||||||||| |||  ||||||||| |||||| |||||||||||| |||||||||||||||| |||||| |||||    
T  9946643 aaacatgtttcatgtttcaatttctaagtaaaaaaatcagattccatgtttctatttttaagttaaaaaagcacatctttagtaaaaataattggtaatt 9946742  T
Q  670 ttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9946743 ttgattttggtggttaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 9946815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 583 - 742
Target Start/End: Original strand, 33474547 - 33474707
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||     
T  33474547 catgtttcaatttctaactaaaaaatcatgttccatgtttctatttctaagtttaaaaacacgtctttagtaaaaataattgctaattttgatttcagta 33474646  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||| |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||    
T  33474647 gctgataatcattatatgaatgttatttttaatttaaattgaagattaatcttttaaaaaa 33474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 583 - 742
Target Start/End: Original strand, 24534836 - 24534996
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaa-cacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||| || || |||||||||| ||||||||||||||||||| |||    
T  24534836 catgtttcaatttctaagtaaagaattatgttccatgtttctatttctaaattaaaaaaacagat-tttagtaaaaataattgctaattttgattttggt 24534934  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  24534935 ggctaataatcattatacgagtgttattttcaatttaaacagaaaattaatcttttaaaaaa 24534996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 601 - 742
Target Start/End: Complemental strand, 44004457 - 44004316
Alignment:
Q  601 taaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacg 699  Q
    |||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||| |||||||||||| | ||||||||||||||||||||    
T  44004457 taaaaagtcatgttccatgtttctatttcta-gttaaaaaacacgtctttagtaaaaataattgttaattttgattttgatggctaataatcattatacg 44004359  T
Q  700 agtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  44004358 agtgttattttcaatttaaatagaagatttatcttttaaaaaa 44004316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 583 - 742
Target Start/End: Complemental strand, 21467052 - 21466885
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt--------ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgat 674  Q
    |||||||||||||||| ||||||||||||||| ||||||        ||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  21467052 catgtttcaatttctatgtaaaaaatcatgtttcatgtttcatgtttctatttccaagttaaaaaacacctctttagtaaaactaattgctaattttgat 21466953  T
Q  675 ttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||   |||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  21466952 tttcatggctaataatcattataagagtgttattttcaatataaacagaagattaatcttttaaaaaa 21466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 583 - 748
Target Start/End: Complemental strand, 6976716 - 6976555
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcggtg 681  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||      ||||||| || |||||||||||| |||||||||||||| |||| ||||    
T  6976716 catgtttcaatttctaaataaaaaatcatgttccatgttactattt------taaaaaatacgtctttagtaaaaataattgctaattttaattttggtg 6976623  T
Q  682 gctaataatcattatacgagtgttattttcaatttaaatagaagattaa-tcttttaaaaaattgtgc 748  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||    
T  6976622 gctaataatcattatacgaatgttattttcaatttaaattgaagaataatttttttaaaaaattgtgc 6976555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 645 - 749
Target Start/End: Complemental strand, 13751537 - 13751432
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttt-aaaaaat 743  Q
    |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13751537 tctttagtaaaaataattgctaattttaatttcgatggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttcaaaaaat 13751438  T
Q  744 tgtgcg 749  Q
    ||||||    
T  13751437 tgtgcg 13751432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 736
Target Start/End: Complemental strand, 13569403 - 13569255
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgt---tctatttctaagttaaaaaacacatctttagtaaaagtaattgctaattttgatttcgg 679  Q
    ||||||| ||||| ||||||||||  |||||||||| |   ||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||  |    
T  13569403 catgttttaatttttaagtaaaaacccatgttccatatgtttctatttctaagttaaaaaacacgtccttaataaaaataattgctaattttgattttag 13569304  T
Q  680 tggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttt 736  Q
    |        |||||||||||||||||||||||||  |||||||||||||||| ||||    
T  13569303 t--------atcattatacgagtgttattttcaacataaatagaagattaatttttt 13569255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 658 - 737
Target Start/End: Original strand, 1738683 - 1738762
Alignment:
Q  658 taattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttta 737  Q
    |||||| ||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  1738683 taattggtaattttaatttcggtggctcataatcattatacaagtgttatttccaatttaaataaaagattaatcattta 1738762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 645 - 710
Target Start/End: Original strand, 45231609 - 45231674
Alignment:
Q  645 tctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttatttt 710  Q
    |||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||| ||||    
T  45231609 tctttagtaaaaataattgctaattttaattttggtggctaataaccattatacgagtgttttttt 45231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 648 - 742
Target Start/End: Complemental strand, 31661405 - 31661311
Alignment:
Q  648 ttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||| |||| ||||||||||||||||||| | ||  |||| |||||||||||   ||||||||||||| ||||||||||||  ||||||||||||    
T  31661405 ttagaaaaaataattgctaattttgattttgatgaataatgatcattatacggaagttattttcaattcaaatagaagattgttcttttaaaaaa 31661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 470 - 566
Target Start/End: Complemental strand, 6976836 - 6976740
Alignment:
Q  470 cgtaatttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaagnnnnnnnttattgctcaatatccccacccccactc 566  Q
    |||| |||| ||||||||||||| ||||||||| ||| ||||||||| | |||| |||||||       |||||| |||||||||||| ||||||||    
T  6976836 cgtattttggggagtgcaaagagttcaaccgagttgggcctcccaaagtgatggacctcaagaaaaaaattattgttcaatatccccatccccactc 6976740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 475 - 531
Target Start/End: Original strand, 24534721 - 24534777
Alignment:
Q  475 tttgaggagtgcaaagagctcaaccgagctggacctcccaaaataatgggcctcaag 531  Q
    |||| ||||||||| |||||||| |||||||| ||||||||| | ||||||||||||    
T  24534721 tttggggagtgcaacgagctcaatcgagctgggcctcccaaagtgatgggcctcaag 24534777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 583 - 744
Target Start/End: Original strand, 42624696 - 42624859
Alignment:
Q  583 catgtttcaatttctaagtaaaaaatcatgttccatgtt-ctatttctaagttaaaaaa-cacatctttagtaaaagtaattgctaattttgatttcggt 680  Q
    ||||||||||||| |||||||||||| | |||||||||| |||||||||| || ||| | ||| |||||| ||||| |||||||||||||| ||||||||    
T  42624696 catgtttcaatttttaagtaaaaaattaggttccatgtttctatttctaaattgaaatagcacgtctttaataaaaataattgctaattttaatttcggt 42624795  T
Q  681 ggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaatt 744  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  42624796 ggctaataaccattatacgagtgttaatatcaatttaaatagaagattaatcttttaaaaaatt 42624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 623 - 748
Target Start/End: Original strand, 54561082 - 54561208
Alignment:
Q  623 tatttctaagttaaaaaa-cacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaata 721  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||    
T  54561082 tatttctaagttaaaaaaacacgtctttagtaaaactaattgctaattttgattttggtagctaataatcattatatgagtgttattttcaatttaaata 54561181  T
Q  722 gaagattaatcttttaaaaaattgtgc 748  Q
    |||||||||||||| ||||||||||||    
T  54561182 gaagattaatctttaaaaaaattgtgc 54561208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 676 - 742
Target Start/End: Complemental strand, 7741939 - 7741874
Alignment:
Q  676 tcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||  ||||||||||||    
T  7741939 tcggtggctaataattattatacga-tgttattttcaatttaaatataagatttctcttttaaaaaa 7741874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 696 - 745
Target Start/End: Complemental strand, 19903011 - 19902962
Alignment:
Q  696 tacgagtgttattttcaatttaaatagaagattaatcttttaaaaaattg 745  Q
    |||| |||||||||||||||||||||||||| || |||||||||||||||    
T  19903011 tacgggtgttattttcaatttaaatagaagaatattcttttaaaaaattg 19902962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 704 - 742
Target Start/End: Original strand, 7650520 - 7650558
Alignment:
Q  704 ttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  7650520 ttattttcaatttaaatagaagattgctcttttaaaaaa 7650558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 624 - 742
Target Start/End: Complemental strand, 284386 - 284268
Alignment:
Q  624 atttctaagttaaaaaa-cacatctttagtaaaagtaattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatag 722  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| ||||    
T  284386 atttctaagttaaaaaaacacatctttaataaaa-taattgctaattttaatttcggtggttaataatcattatgcgagtgttatttttaatttagatag 284288  T
Q  723 aagattaatcttttaaaaaa 742  Q
    ||| ||||||| ||||||||    
T  284287 aagtttaatctcttaaaaaa 284268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 658 - 742
Target Start/End: Complemental strand, 5855 - 5771
Alignment:
Q  658 taattgctaattttgatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 742  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||| |||| ||||||||| |||||||  ||||||||||||    
T  5855 taattgctaattttgatttcggtggctaataatcattatatggatgttgtttttaatttaaattgaagattgctcttttaaaaaa 5771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University