View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4450-Insertion-2 (Length: 892)

Name: NF4450-Insertion-2
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4450-Insertion-2
NF4450-Insertion-2
[»] chr1 (15 HSPs)
chr1 (305-892)||(42471041-42471632)
chr1 (7-319)||(42471644-42471970)
chr1 (549-658)||(30210177-30210285)
chr1 (549-655)||(4075670-4075777)
chr1 (563-657)||(6768956-6769049)
chr1 (549-637)||(17746599-17746687)
chr1 (549-627)||(26795461-26795544)
chr1 (551-638)||(37346134-37346221)
chr1 (533-596)||(44108879-44108943)
chr1 (549-640)||(5715031-5715122)
chr1 (551-638)||(17702955-17703042)
chr1 (569-631)||(32712100-32712162)
chr1 (569-658)||(5786327-5786416)
chr1 (619-656)||(47666577-47666614)
chr1 (558-615)||(50004254-50004310)
[»] chr3 (7 HSPs)
chr3 (504-638)||(40417596-40417728)
chr3 (551-638)||(40700802-40700889)
chr3 (584-637)||(21748185-21748238)
chr3 (559-632)||(48935746-48935819)
chr3 (531-658)||(45817956-45818083)
chr3 (533-604)||(20525556-20525628)
chr3 (551-631)||(28457566-28457646)
[»] chr5 (17 HSPs)
chr5 (504-650)||(26449046-26449191)
chr5 (549-640)||(32528991-32529082)
chr5 (549-638)||(13416334-13416422)
chr5 (559-624)||(42458788-42458853)
chr5 (531-658)||(3522452-3522572)
chr5 (551-638)||(33007773-33007860)
chr5 (551-637)||(31078167-31078253)
chr5 (553-635)||(39466626-39466708)
chr5 (532-657)||(9198025-9198153)
chr5 (551-638)||(29861166-29861253)
chr5 (549-616)||(39351566-39351633)
chr5 (553-627)||(25346839-25346913)
chr5 (570-657)||(7010096-7010182)
chr5 (563-626)||(16290378-16290441)
chr5 (584-633)||(7883572-7883621)
chr5 (648-681)||(27260509-27260542)
chr5 (569-638)||(33134403-33134471)
[»] chr2 (12 HSPs)
chr2 (532-649)||(29463224-29463342)
chr2 (569-654)||(40627037-40627122)
chr2 (563-658)||(6458281-6458375)
chr2 (532-638)||(12027330-12027436)
chr2 (557-657)||(1529380-1529471)
chr2 (432-644)||(3044453-3044667)
chr2 (549-640)||(6279141-6279232)
chr2 (531-631)||(19427146-19427247)
chr2 (551-640)||(41595539-41595628)
chr2 (531-657)||(13527017-13527145)
chr2 (551-627)||(13995526-13995602)
chr2 (583-632)||(5256826-5256874)
[»] chr4 (11 HSPs)
chr4 (530-638)||(50876872-50876981)
chr4 (551-635)||(37910443-37910527)
chr4 (549-649)||(26619935-26620035)
chr4 (563-658)||(2183991-2184085)
chr4 (563-658)||(45413067-45413161)
chr4 (569-633)||(45498955-45499019)
chr4 (549-644)||(14135141-14135235)
chr4 (549-611)||(22205335-22205397)
chr4 (551-626)||(36198604-36198679)
chr4 (551-625)||(44289416-44289490)
chr4 (569-638)||(35075167-35075235)
[»] chr8 (11 HSPs)
chr8 (532-654)||(39284570-39284693)
chr8 (531-655)||(32897612-32897737)
chr8 (558-638)||(40953535-40953615)
chr8 (563-638)||(15259188-15259263)
chr8 (551-638)||(16295635-16295722)
chr8 (551-638)||(16303337-16303424)
chr8 (551-638)||(43597131-43597218)
chr8 (584-638)||(11656124-11656178)
chr8 (585-631)||(27696563-27696609)
chr8 (551-633)||(42180609-42180690)
chr8 (569-658)||(23586415-23586504)
[»] chr6 (9 HSPs)
chr6 (552-638)||(32329639-32329725)
chr6 (551-638)||(9315106-9315193)
chr6 (551-638)||(391061-391148)
chr6 (551-638)||(12255411-12255498)
chr6 (584-633)||(29969609-29969658)
chr6 (403-518)||(128782-128898)
chr6 (606-657)||(17991061-17991112)
chr6 (551-638)||(23404785-23404872)
chr6 (549-611)||(31799401-31799463)
[»] chr7 (7 HSPs)
chr7 (531-632)||(37970448-37970550)
chr7 (549-658)||(29127431-29127539)
chr7 (534-655)||(41481787-41481907)
chr7 (558-637)||(44108478-44108556)
chr7 (531-638)||(28109241-28109349)
chr7 (569-626)||(34866231-34866288)
chr7 (531-632)||(23318319-23318420)
[»] scaffold1822 (1 HSPs)
scaffold1822 (570-658)||(529-616)
[»] scaffold0474 (1 HSPs)
scaffold0474 (577-649)||(11309-11381)


Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 305 - 892
Target Start/End: Complemental strand, 42471632 - 42471041
Alignment:
Q  305 tgcacaatttgttttctccataattctttacaattttcttcataattctgttcccaatctttctaaattacgaatttctttataannnnnnnncttcgta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||        |||| ||    
T  42471632 tgcacaatttgttttctccataattctttacaattttcttcataattctgttcccaatctttctaaattacgattttcttcataattttttttcttcata 42471533  T
Q  405 aaattacagtcaatatcaattccatcattttcttcccaatcttgttaccaatataattaattacgtgtgtaaaattaaagttatggagtgttgttatttt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  42471532 aaattacagtcaatatcaattccatcattttcttcccaatcttgttaccaatagatttaattacgtgtgtaaaattaaagttatggagtgttgttatttt 42471433  T
Q  505 tatcatgtcaataataaaa-ctatgcgccaaacacatgatatgata-----aataatgctatcatattttttatcatgtgtgtaccaaacacatgatatg 598  Q
     ||||| |||||||||||| ||||||||||||||||||||||||||     |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  42471432 catcatatcaataataaaaactatgcgccaaacacatgatatgatatgataaataatgctatcatatttcttatcatgtgtgcaccaaacacatgatatg 42471333  T
Q  599 ataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatgcgtaccaaacggcctcttaaggtacttaacnnnnnnnntc 698  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||| ||        ||    
T  42471332 ataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcatgcgcatcaaacggccccttaa-gtacttgacaaaaaaaatc 42471234  T
Q  699 tttccaccaccgaatttcaccctcaacgtacgaggccgctgccacacaaatttcacttaaattttctaaagtcaataatccaactagagagggaaataat 798  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42471233 tttccaccaccgaatttcaccctcaacgtacgaggccgctgccgcacaaatttcacttaaattctctaaagtcaataatccaactagagagggaaataat 42471134  T
Q  799 tgaacgattcgtatatattttcctaccaatggcaccgtctttgcacagttctgttttagcataatgtattctatatctaatcacgctattttgt 892  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42471133 tgaacgattcgtatatatttccctaccaatggca-cgtctttgcacagttctgttttagcataatgtattctatatctaatcacgctattttgt 42471041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 42471970 - 42471644
Alignment:
Q  7 aaagctatcaaatgcgcattctctctttatgaggaaacctccttccacacccagcttcaacaattttcatgttctattcnnnnnnnnnnnnnnnnnncct 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||                   ||    
T  42471970 aaagctatcaaacgcgcattctctctttatgaggaaacctccttcgacacccagcttcaacgtttttcatgttctattcttttttcttttttttttttct 42471871  T
Q  107 taaatttctttccaatcgatatcaaatccaatcacttttcttcatgctttgtttcttcaatagatttccttccccaatcaatttggttgc---------- 196  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||              
T  42471870 taaatttcttcccaatcgatatcaaatccaatcacttttcttcatgctttgtttctccaatagatttccttccccaatcaatttggttgctgcacatgaa 42471771  T
Q  197 ----aaaataccatttacgactttccactatattcttcatatgaaaattggctattttgtctaattgattttctgcaatcgatttacttttcaatgttcc 292  Q
        |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42471770 ttggaaaataccatttacgattttccactattttcttcatatgaaaattggctattttgtctaattgattttctgcaatcgatttacttttcaatgttcc 42471671  T
Q  293 tccaatcatttttgcacaatttgtttt 319  Q
    |||||||||||||||||||||||||||    
T  42471670 tccaatcatttttgcacaatttgtttt 42471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 549 - 658
Target Start/End: Original strand, 30210177 - 30210285
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaa 648  Q
    |||||||  |||||| ||| |||||||||||||| ||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||| || |  | |    
T  30210177 aaataatattatcatgtttcttatcatgtgtgtatcaaacaagtgataggataaatgt-tatcatgtcattatcatatcatatctttatccatctcttta 30210275  T
Q  649 tcctatcatg 658  Q
    ||||||||||    
T  30210276 tcctatcatg 30210285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 655
Target Start/End: Complemental strand, 4075777 - 4075670
Alignment:
Q  549 aaataatgctatcatatttt-ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttcta 647  Q
    ||||||||||||  |||||| ||| |||||||| ||||||||||||||| ||||| |||||||| ||||| ||||||||| |||| || || || ||||     
T  4075777 aaataatgctattgtattttcttaccatgtgtgaaccaaacacatgataggataagtgtctatcttgtcactatcatatcctatccttgtccatcttctt 4075678  T
Q  648 atcctatc 655  Q
    ||||||||    
T  4075677 atcctatc 4075670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 563 - 657
Target Start/End: Original strand, 6768956 - 6769049
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcat 657  Q
    |||| ||||||||||||| ||||||||  ||||| |||||| || ||||| |||| |||||||||||||||||||| || |||| ||||||||||    
T  6768956 tattgtttatcatgtgtgcaccaaacatgtgataggataaacgt-tatcaagtcactatcatatcatatctttatccatcttcttatcctatcat 6769049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 549 - 637
Target Start/End: Original strand, 17746599 - 17746687
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttat 637  Q
    ||||||| |||| |||||| |||||||||||  | |||||| |||||||||||||||||| || |  ||||||||||||| ||||||||    
T  17746599 aaataatactataatatttgttatcatgtgttcaacaaacatatgatatgataaatgtctctcctaccattatcatatcacatctttat 17746687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Original strand, 26795461 - 26795544
Alignment:
Q  549 aaataatgctatcatattttttat-----catgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatc 627  Q
    ||||||||||||||| ||||||||     |||||||| ||||||||||||||| |||||  ||||||||||||| |||||||||    
T  26795461 aaataatgctatcattttttttatcttatcatgtgtgcaccaaacacatgataggataagcgtctatcatgtcagtatcatatc 26795544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 37346221 - 37346134
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||||| ||| |||||||||| | | ||||||||||||| ||| ||||| ||||||||| |||||||||| ||||| ||||    
T  37346221 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcctatctctatc 37346134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 596
Target Start/End: Original strand, 44108879 - 44108943
Alignment:
Q  533 aaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgata 596  Q
    |||||||| |||||||||| |||||||||||| ||| ||||||||||||  ||||||||||||||    
T  44108879 aaacacataatatgataaaataatgctatcatgtttattatcatgtgtgccccaaacacatgata 44108943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 640
Target Start/End: Complemental strand, 5715122 - 5715031
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatcta 640  Q
    |||||||  ||| |||||| |||||||| ||| |||||||| |||||||||||||| |||||| |  || |||||| ||  |||||||||||    
T  5715122 aaataatattataatatttattatcatgcgtgcaccaaacatatgatatgataaatatctatcttaccactatcatgtctcatctttatcta 5715031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 17702955 - 17703042
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| |||||||||||| | |||| |||||||| ||| ||||  ||||||||| |||||||||| ||||| ||||    
T  17702955 ataatgatatcctgtttgttatcatgtgtgcatcaaaaacatgataggattaatgcttatcatgtctttatcatatcttatctctatc 17703042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 631
Target Start/End: Complemental strand, 32712162 - 32712100
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatat 631  Q
    |||||||||||| ||||||| |||||||  |||| | |||||||||| | |||||||||||||    
T  32712162 ttatcatgtgtgcaccaaacgcatgatagcataagtatctatcatgttactatcatatcatat 32712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 5786327 - 5786416
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    ||||||||||| ||||||||  | |||||||||| ||| ||||||||  ||||| |||  |||| ||||| |  ||||||||||||||||    
T  5786327 ttatcatgtgtataccaaacgtaagatatgataagtgtttatcatgttgttatcctattctatccttatccagcttctaatcctatcatg 5786416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 656
Target Start/End: Complemental strand, 47666614 - 47666577
Alignment:
Q  619 tatcatatcatatctttatctattttctaatcctatca 656  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  47666614 tatcatatcctatctttatctattttctaatcccatca 47666577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 615
Target Start/End: Complemental strand, 50004310 - 50004254
Alignment:
Q  558 tatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgt 615  Q
    |||||| ||| |||||||||||| |||||||| |||||| ||||||||| ||||||||    
T  50004310 tatcatgtttgttatcatgtgtgcaccaaacatatgataggataaatgt-tatcatgt 50004254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 504 - 638
Target Start/End: Original strand, 40417596 - 40417728
Alignment:
Q  504 ttatcatgtcaataataaaactatgcgccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataa 602  Q
    ||||||||||||||| |||  |||| | |||||||||||||||||||| |||||||||||||||| |||||||| ||| |||||||| ||||||||||||    
T  40417596 ttatcatgtcaataacaaa--tatgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaacatatgatatgataa 40417693  T
Q  603 atgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||| |||||||||| | ||||||| |||| |||||    
T  40417694 atgt-tatcatgtcactgtcatatcctatccttatc 40417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 40700889 - 40700802
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||||| ||| |||||||||||| | ||||||||||||| ||| ||||| ||||||||| |||||||||| ||||| ||||    
T  40700889 ataatgatatcatgtttgttatcatgtgtgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcctatctctatc 40700802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 637
Target Start/End: Complemental strand, 21748238 - 21748185
Alignment:
Q  584 caaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttat 637  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||    
T  21748238 caaacacatgatatgattaatgtttatcatgtccttatcatatcctatctttat 21748185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 48935819 - 48935746
Alignment:
Q  559 atcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatc 632  Q
    ||||| ||| |||||||||||  ||||||||||||||| ||||| |||||||||||||| |||| |||| ||||    
T  48935819 atcatctttcttatcatgtgtacaccaaacacatgataggataagtgtctatcatgtcactatcctatcctatc 48935746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 658
Target Start/End: Complemental strand, 45818083 - 45817956
Alignment:
Q  531 ccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||| |||||| |||||| ||||| |||| | ||| ||||||||||| ||||||||  | |||||||||| |||||||||||| |||||  ||| ||    
T  45818083 ccaaacatatgataggataaaataatgttatc-tctttcttatcatgtgtataccaaacgtaagatatgataagtgtctatcatgttattattttataat 45817985  T
Q  630 atctttatctattttctaatcctatcatg 658  Q
    ||| ||||| |  |||||||| |||||||    
T  45817984 atccttatccaacttctaatcatatcatg 45817956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 604
Target Start/End: Original strand, 20525556 - 20525628
Alignment:
Q  533 aaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaat 604  Q
    ||||| ||||||||||||| ||||  |||||| ||| ||||||| | || |||||||||||||||||||||||    
T  20525556 aaacatatgatatgataaaataataatatcatctttcttatcatatctgcaccaaacacatgatatgataaat 20525628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 631
Target Start/End: Complemental strand, 28457646 - 28457566
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatat 631  Q
    |||||| |||| ||||| |||||||||| | | |||||| |||||| |||  |||| |||||||||||| |||||||||||    
T  28457646 ataatgatatcttatttgttatcatgtgcgcatcaaacatatgataggattgatgtttatcatgtcattgtcatatcatat 28457566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 504 - 650
Target Start/End: Original strand, 26449046 - 26449191
Alignment:
Q  504 ttatcatgtcaataataaaactatgcgccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataa 602  Q
    ||||||||||||||| |||  | |||  ||||||||||||| |||||| ||||| |||||| ||| ||||||| |||| ||||||  ||||||| |||||    
T  26449046 ttatcatgtcaataacaaa--tgtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataa 26449143  T
Q  603 atgtctatcatgtcattatcatatcatatctttatctattttctaatc 650  Q
     |||||||||||||| ||||||||||||| |||||| |||||||||||    
T  26449144 gtgtctatcatgtcactatcatatcatatttttatccattttctaatc 26449191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 549 - 640
Target Start/End: Complemental strand, 32529082 - 32528991
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatcta 640  Q
    ||||||| ||||||||||| ||||||| | || |||||||||||||||  |||| |||||||||| ||| ||||||||| ||||||||||||    
T  32529082 aaataatactatcatatttgttatcatctatgcaccaaacacatgatagaataagtgtctatcatatcagtatcatatcctatctttatcta 32528991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 549 - 638
Target Start/End: Complemental strand, 13416422 - 13416334
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||| ||| ||| ||||| |||||||||| |||||||||||||| |||||    
T  13416422 aaataatgctatcatctttcttatcatatgtgcaccaaacacataataggat-aatgtttatcatgtcactatcatatcatatccttatc 13416334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 624
Target Start/End: Complemental strand, 42458853 - 42458788
Alignment:
Q  559 atcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcat 624  Q
    ||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||    
T  42458853 atcatatttcttatcatgtgtgcaccaaacacatgacatgatacatgtctatcatgttaatatcat 42458788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 658
Target Start/End: Complemental strand, 3522572 - 3522452
Alignment:
Q  531 ccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||||| |||| |||||| ||||| |||||| |||||||||||| ||| |||||        || ||||||||| |||||||| | |||||||| ||    
T  3522572 ccaaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcaccaa--------taggataaatgtttatcatgttactatcatattat 3522481  T
Q  630 atctttatctattttctaatcctatcatg 658  Q
    ||||||||||||||||||||  |||||||    
T  3522480 atctttatctattttctaattatatcatg 3522452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 33007860 - 33007773
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| |||||||||||| | ||||||||||||||||| |||   |||||||||||||||||||| ||||| ||||    
T  33007860 ataatgatatcttgtttgttatcatgtgtgcatcaaacacatgatatgattaatacttatcatgtcattatcatatcttatctctatc 33007773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 637
Target Start/End: Original strand, 31078167 - 31078253
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttat 637  Q
    |||||| |||||| ||| |||||||||| | | |||||||||||||  || ||||| ||||||||| ||||||||| ||||||||||    
T  31078167 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgatagaattaatgtttatcatgtctttatcatattatatctttat 31078253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 635
Target Start/End: Original strand, 39466626 - 39466708
Alignment:
Q  553 aatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatcttt 635  Q
    ||||||||||| |||| |||||| ||||  |||||||  ||||||||||||||| |||| ||| | |||||||||||||||||    
T  39466626 aatgctatcatcttttatatcatatgtgccccaaacatgtgatatgataaatgtatatcctgttactatcatatcatatcttt 39466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 657
Target Start/End: Original strand, 9198025 - 9198153
Alignment:
Q  532 caaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtacca--aacacatgatatgataaatgtctatcatgtcattatcatatca 628  Q
    ||||||||| |||||||||| ||||  |||||| |||||||||||||||| ||||  |||  |||| ||||||| |||||||| | ||  |||||||||     
T  9198025 caaacacataatatgataaaataatattatcatcttttttatcatgtgtgcaccaagaacgtatgacatgataagtgtctatcttatccctatcatatcc 9198124  T
Q  629 tatctttatctattttctaatcctatcat 657  Q
    |||||||||  ||||| ||||| ||||||    
T  9198125 tatctttattcattttttaatcttatcat 9198153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 29861166 - 29861253
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| ||||||||||   | ||||||||||||| ||| ||||| |||||||||||||||||||| ||||| ||||    
T  29861166 ataatgatatcgtgtttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtcattatcatatcttatctctatc 29861253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 616
Target Start/End: Original strand, 39351566 - 39351633
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtc 616  Q
    |||||||| |||||||||| |||||||||| | | ||||||||||||||||| ||||  |||||||||    
T  39351566 aaataatgatatcatatttgttatcatgtgcgcatcaaacacatgatatgattaatgcatatcatgtc 39351633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 627
Target Start/End: Complemental strand, 25346913 - 25346839
Alignment:
Q  553 aatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatc 627  Q
    |||| |||| ||||| |||||||||| | | ||||||||||||| ||| ||||| ||||||||| ||||||||||    
T  25346913 aatgatatcctatttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtctttatcatatc 25346839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 657
Target Start/End: Complemental strand, 7010182 - 7010096
Alignment:
Q  570 tatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcat 657  Q
    ||||||||||| ||||||||  ||||| ||||||||| |||||||||| ||||||||  |||| ||||| ||||  | ||||||||||    
T  7010182 tatcatgtgtgcaccaaacaggtgataggataaatgt-tatcatgtcactatcatattctatccttatccatttctttatcctatcat 7010096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 626
Target Start/End: Complemental strand, 16290441 - 16290378
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatat 626  Q
    ||||||||||||| |||  | | ||||||||||| ||||| |||||||||||||| ||||||||    
T  16290441 tattttttatcatttgtacatcgaacacatgataggataattgtctatcatgtcactatcatat 16290378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 633
Target Start/End: Complemental strand, 7883621 - 7883572
Alignment:
Q  584 caaacacatgatatgataaatgtctatcatgtcattatcatatcatatct 633  Q
    ||||||||||||||||| ||||| || |||||| |||||||||| |||||    
T  7883621 caaacacatgatatgattaatgtttaacatgtccttatcatatcctatct 7883572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 681
Target Start/End: Complemental strand, 27260542 - 27260509
Alignment:
Q  648 atcctatcatgcgtaccaaacggcctcttaaggt 681  Q
    ||||||||||||||||||||||| ||||||||||    
T  27260542 atcctatcatgcgtaccaaacggactcttaaggt 27260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 638
Target Start/End: Original strand, 33134403 - 33134471
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||||||| | | ||||||||||||| ||| ||||| ||||||||| |||||||||| ||||| ||||    
T  33134403 ttatcatgtgcgcatcaaacacatgataggattaatgt-tatcatgtctttatcatatcttatctctatc 33134471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 532 - 649
Target Start/End: Original strand, 29463224 - 29463342
Alignment:
Q  532 caaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcata 630  Q
    |||||| ||||||||||||| |||||||||||| ||| ||||||| |||  |||||||| ||| |  ||||||||| |||||||||| ||||||||| ||    
T  29463224 caaacatatgatatgataaaataatgctatcatctttcttatcatatgtacaccaaacatatgttcggataaatgtttatcatgtcactatcatatctta 29463323  T
Q  631 tctttatctattttctaat 649  Q
    |||| ||||||||||||||    
T  29463324 tcttcatctattttctaat 29463342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 569 - 654
Target Start/End: Original strand, 40627037 - 40627122
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctat 654  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||| | |||||||| ||||| ||||| |  ||||||||||||    
T  40627037 ttatcatgtgtgtaccaaacacatgaaatgataagtgtctatcttgttactatcatattatatccttatccaacttctaatcctat 40627122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 6458281 - 6458375
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    |||| ||||||||||||| ||||||||  ||||| ||||||||| ||| | ||||||||||||||||||| ||||| || |||| |||||||||||    
T  6458281 tattatttatcatgtgtgcaccaaacatgtgataggataaatgt-tataaagtcattatcatatcatatccttatccatcttcttatcctatcatg 6458375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 532 - 638
Target Start/End: Original strand, 12027330 - 12027436
Alignment:
Q  532 caaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcata 630  Q
    ||||||| ||||| |||||| ||||| |||| | ||||||||||||||||  | |||||||||| ||||||||||| ||| || ||| ||||||||||||    
T  12027330 caaacacgtgataggataaaataatgatatcctcttttttatcatgtgtgcccaaaacacatgacatgataaatgt-tattatatcactatcatatcata 12027428  T
Q  631 tctttatc 638  Q
    || |||||    
T  12027429 tccttatc 12027436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 657
Target Start/End: Complemental strand, 1529471 - 1529380
Alignment:
Q  557 ctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatca 656  Q
    ||||||||||| |||||||||||| ||||||||||||||  ||||| ||||         | |||||||||||||||||||| ||||||||||| |||||    
T  1529471 ctatcatatttcttatcatgtgtgcaccaaacacatgatgggataattgtc---------actatcatatcatatctttatccattttctaatcttatca 1529381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 644
Target Start/End: Complemental strand, 3044667 - 3044453
Alignment:
Q  432 ttttcttcccaatcttgttaccaatataattaattacgtgtgtaaaattaaagttatggagtgttgttatttttatca-tgtcaataataaaactatgcg 530  Q
    ||||||| |||||||||||  ||||  | ||||||| |||||||||||| |||||||| || ||||||  |||||||| |||||||||    | | |||     
T  3044667 ttttctttccaatcttgttcacaattgatttaattatgtgtgtaaaatttaagttatgcagcgttgtttattttatcaatgtcaataa----agtgtgca 3044572  T
Q  531 ccaaacaca----tgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcata 625  Q
    ||||||| |    |||||  ||||| |||||||||| | ||| ||||||||| ||||||||||| |||||| ||||| | | |||||| | | |||||||    
T  3044571 ccaaacaaacaaatgatagaataaaataatgctatcttttttcttatcatgtatgtaccaaacatatgataggataagtctttatcatattactatcata 3044472  T
Q  626 tcatatctttatctatttt 644  Q
     | ||||||||||| ||||    
T  3044471 gcctatctttatctttttt 3044453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 640
Target Start/End: Original strand, 6279141 - 6279232
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatcta 640  Q
    |||| |||| ||| || |||||||||||||   |||||||||||||||||||||| || |||||| | ||| |||||||||||  |||||||    
T  6279141 aaatgatgcaatcctaatttttatcatgtggtcaccaaacacatgatatgataaaagtttatcatattattgtcatatcatatacttatcta 6279232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 631
Target Start/End: Original strand, 19427146 - 19427247
Alignment:
Q  531 ccaaacacatgatatgataa-ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||| | || |||||||  |||| | |||| ||||||||| | ||| ||| |||||||    
T  19427146 ccaaacacaaaatatgataacataatgctatcatatttattatcatatatgcaccaaacgtatgacacgatagatgtctatcttatcactatgatatcat 19427245  T
Q  630 at 631  Q
    ||    
T  19427246 at 19427247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 640
Target Start/End: Original strand, 41595539 - 41595628
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatcta 640  Q
    |||||| |||||| ||| |||| |||||   | ||||||||| ||| ||| ||||| |||||||||||||||||||| ||||| ||||||    
T  41595539 ataatgatatcatgtttgttattatgtgcacatcaaacacataataggattaatgtttatcatgtcattatcatatcttatctatatcta 41595628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 657
Target Start/End: Complemental strand, 13527145 - 13527017
Alignment:
Q  531 ccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||| |||||| |||||| ||||| |||||||||| |||| ||||||| | ||||  |||||   ||||||| | |||| || |||||||||||  |    
T  13527145 ccaaacatatgataggataaaataatgttatcatatttcttattatgtgtgcatcaaatgcatgaggggataaatatttatcctgccattatcatattct 13527046  T
Q  630 atctttatcta-ttttctaatcctatcat 657  Q
    ||||||||| | |||||||||| ||||||    
T  13527045 atctttatcaatttttctaatcatatcat 13527017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 627
Target Start/End: Complemental strand, 13995602 - 13995526
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatc 627  Q
    |||||| |||||| ||| |||||||||| | | ||||||||||||| ||| ||||| ||||||||| || |||||||    
T  13995602 ataatgatatcatgtttcttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttgtcatatc 13995526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 5256826 - 5256874
Alignment:
Q  583 ccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatc 632  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||||||    
T  5256826 ccaaacacacgataggataa-tgtctatcatgtcactatcatatcatatc 5256874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 530 - 638
Target Start/End: Original strand, 50876872 - 50876981
Alignment:
Q  530 gccaaacacatgatatgataa-ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatca 628  Q
    |||||||| |||||| ||||| ||| || ||||||||||||||||||||||  ||||||| ||||||||||||  ||| ||||||||||||||| |||||    
T  50876872 gccaaacatatgataagataatatattgttatcatattttttatcatgtgtccaccaaacgcatgatatgataggtgtatatcatgtcattatcgtatca 50876971  T
Q  629 tatctttatc 638  Q
    |||| |||||    
T  50876972 tatccttatc 50876981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 635
Target Start/End: Complemental strand, 37910527 - 37910443
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatcttt 635  Q
    |||||| |||| | ||| |||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  37910527 ataatgatatcctgtttgttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtcattatcatatcctatcttt 37910443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 26620035 - 26619935
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaa 648  Q
    ||||||||||||||||||||||||||||  || | ||||  ||||| | |||||||||||||||||| ||||||||||| |||  ||||  |||||||||    
T  26620035 aaataatgctatcatattttttatcatgcatgcatcaaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattcattttctaa 26619936  T
Q  649 t 649  Q
    |    
T  26619935 t 26619935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 2183991 - 2184085
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    |||| ||||||||||||| ||||||||  ||||| ||||||||| ||| | ||||||||||||||||||| ||||| || |||| |||||||||||    
T  2183991 tattatttatcatgtgtgcaccaaacatgtgataagataaatgt-tataaggtcattatcatatcatatccttatccatcttcttatcctatcatg 2184085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 45413161 - 45413067
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    |||| ||||||||||||| | |||||| |||||| ||||||||| ||||| |||| |||||||| ||||||||||| || |||| |||||||||||    
T  45413161 tattatttatcatgtgtgcatcaaacatatgataagataaatgt-tatcaggtcactatcatattatatctttatccatcttcttatcctatcatg 45413067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 45499019 - 45498955
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatct 633  Q
    |||||||||||| | ||||||||||||||||| ||||| ||||||||| |||||||||| |||||    
T  45499019 ttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtccttatcatatcctatct 45498955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 644
Target Start/End: Complemental strand, 14135235 - 14135141
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctatttt 644  Q
    |||||||| |||| ||||| |||||||||| |   |||| |||||||||||||||||| |||||||||  ||||||||||| ||| |||| |||||    
T  14135235 aaataatgttatcttatttattatcatgtgcgcgtcaaatacatgatatgataaatgt-tatcatgtctatatcatatcatgtctctatccatttt 14135141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 22205335 - 22205397
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatc 611  Q
    ||||||||||||||| |||||||||| || || ||||||| ||||||| ||||||||| ||||    
T  22205335 aaataatgctatcatcttttttatcaagtatgcaccaaacgcatgataggataaatgtttatc 22205397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 626
Target Start/End: Complemental strand, 36198679 - 36198604
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatat 626  Q
    |||||| |||||||||| ||||||||||   | ||||||||||||| ||| ||||| ||||||||  |||||||||    
T  36198679 ataatgatatcatatttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtacttatcatat 36198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 625
Target Start/End: Complemental strand, 44289490 - 44289416
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcata 625  Q
    |||||| |||||| ||| |||||||||| | | ||||||||||| | ||| ||||| ||||||||| ||||||||    
T  44289490 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgagaagattaatgtttatcatgtccttatcata 44289416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 638
Target Start/End: Original strand, 35075167 - 35075235
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||||||||||||||||||  | ||| ||||||||| ||| |||||| ||||||||| |||| |||||    
T  35075167 ttatcatgtgtgtaccaaacatgtaataggataaatgt-tattatgtcactatcatatcctatcattatc 35075235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 532 - 654
Target Start/End: Original strand, 39284570 - 39284693
Alignment:
Q  532 caaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcata 630  Q
    |||||| ||||||||||||| ||||| |||| |  |||||||||||| ||  ||||||||||||||||||| ||||||||||||| | | || |||| ||    
T  39284570 caaacatatgatatgataaaataatgatatcctcatttttatcatgtttgccccaaacacatgatatgatagatgtctatcatgttactttcttatccta 39284669  T
Q  631 tctttatctattttctaatcctat 654  Q
    |||||||| | |||||||||||||    
T  39284670 tctttatccaatttctaatcctat 39284693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 32897612 - 32897737
Alignment:
Q  531 ccaaacacatgatatgataaataa-tgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||| |||||| |||||| || || |||| | ||| ||||||| | || |||||||  |||||| |||||||||||||||||||| |||| ||||||    
T  32897612 ccaaacatatgataggataaaaaaatgttatcctctttcttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcat 32897711  T
Q  630 atctttatctattttctaatcctatc 655  Q
    ||||| ||| ||||||||||| ||||    
T  32897712 atcttgatccattttctaatcatatc 32897737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 558 - 638
Target Start/End: Original strand, 40953535 - 40953615
Alignment:
Q  558 tatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| ||| |||||||||| | | ||||||||||||||||| ||||| ||||||||| |||||||||| ||||| ||||    
T  40953535 tatcatgtttgttatcatgtgcgcatcaaacacatgatatgattaatgtttatcatgtcgttatcatatcctatctctatc 40953615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 563 - 638
Target Start/End: Original strand, 15259188 - 15259263
Alignment:
Q  563 tattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    ||||||||||||||  ||||  |||||||||||||||||||||| |||||| ||  ||||||||||| | ||||||    
T  15259188 tattttttatcatgcatgtattaaacacatgatatgataaatgtttatcatatctatatcatatcatgtttttatc 15259263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 16295635 - 16295722
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| ||||||||||   | ||||||||||||| ||| ||||| ||||||||| |||||||||||||||| ||||    
T  16295635 ataatgatatcctgtttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtccttatcatatcatatctctatc 16295722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 16303337 - 16303424
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| ||||||||||   | ||||||||||||| ||| ||||| ||||||||| |||||||||||||||| ||||    
T  16303337 ataatgatatcctgtttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtccttatcatatcatatctctatc 16303424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 43597131 - 43597218
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| ||| |||||| ||||||||||   | |||||| |||||| ||| ||||| ||||||||| |||||||||||||||| ||||    
T  43597131 ataatgatattatatttgttatcatgtgcccatcaaacatatgataggattaatgtttatcatgtccttatcatatcatatctctatc 43597218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 638
Target Start/End: Complemental strand, 11656178 - 11656124
Alignment:
Q  584 caaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| ||||| ||||    
T  11656178 caaacacatgatatgattaatgtttatcatgtccttatcatatcctatctctatc 11656124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 585 - 631
Target Start/End: Original strand, 27696563 - 27696609
Alignment:
Q  585 aaacacatgatatgataaatgtctatcatgtcattatcatatcatat 631  Q
    |||||||||||| ||| ||||| ||||||||| ||||||||||||||    
T  27696563 aaacacatgataggattaatgtttatcatgtccttatcatatcatat 27696609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 633
Target Start/End: Original strand, 42180609 - 42180690
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatct 633  Q
    |||||| |||||| ||| |||||||||| | | |||||  |||||| ||| ||||| ||||||||| ||||||||||||||||    
T  42180609 ataatgatatcatgtttgttatcatgtgcgcatcaaacgtatgataggattaatgt-tatcatgtccttatcatatcatatct 42180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 23586415 - 23586504
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    ||||||||||| ||||||||  | |||||||||| ||| ||||||||  ||||| |||| |||| ||||| |  || |||||||||||||    
T  23586415 ttatcatgtgtataccaaacgtaagatatgataactgtttatcatgttgttatcctatcctatcattatccaacttataatcctatcatg 23586504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 552 - 638
Target Start/End: Original strand, 32329639 - 32329725
Alignment:
Q  552 taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    ||||| |||||||||| |||||||||| ||| ||||||||||||||||| ||||| ||||||||| |||||||||| ||||| ||||    
T  32329639 taatgatatcatatttgttatcatgtgcgtatcaaacacatgatatgattaatgtttatcatgtccttatcatatcttatctctatc 32329725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 9315106 - 9315193
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| |||||||||| | | ||||||||||||| ||| ||||| ||||||||| |||||||||||||||| ||||    
T  9315106 ataatgatatcttgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcatatctctatc 9315193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 391148 - 391061
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| ||||| ||||||||||   | ||||||||||||| ||| ||||| ||||||||| |||||||||| ||||| ||||    
T  391148 ataatgatatcctatttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtctttatcatatcttatctctatc 391061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 12255411 - 12255498
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||||| ||| |||||||||| | | ||||||||||||| ||| ||||| ||||||||| |||| ||||| ||||| ||||    
T  12255411 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgtctttataatatcctatctctatc 12255498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 633
Target Start/End: Complemental strand, 29969658 - 29969609
Alignment:
Q  584 caaacacatgatatgataaatgtctatcatgtcattatcatatcatatct 633  Q
    ||||||||||||| ||| ||||| ||||||||| ||||||||||||||||    
T  29969658 caaacacatgataggattaatgtttatcatgtccttatcatatcatatct 29969609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 128898 - 128782
Alignment:
Q  403 taaaattacagtcaatatcaattccatca-ttttcttcccaatcttgttaccaatataattaattacgtgtgtaaaattaaagttatggagtgttgttat 501  Q
    |||||| ||| || |||||||||||| |  ||||||| |||||||||||  |||| || ||||||| | ||||||||||||||||||  |   |||||      
T  128898 taaaataacaatcgatatcaattccaactgttttctttccaatcttgttcgcaatttatttaattatgggtgtaaaattaaagttatacatctttgttta 128799  T
Q  502 ttttatcatgtcaataa 518  Q
    |||||||||||||||||    
T  128798 ttttatcatgtcaataa 128782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 657
Target Start/End: Complemental strand, 17991112 - 17991061
Alignment:
Q  606 tctatcatgtcattatcatatcatatctttatctattttctaatcctatcat 657  Q
    |||||||||||| |||||||| ||||||||||| |  |||||||||||||||    
T  17991112 tctatcatgtcactatcatattatatctttatccaacttctaatcctatcat 17991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 23404785 - 23404872
Alignment:
Q  551 ataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatc 638  Q
    |||||| |||| | ||| ||||||||||   | |||||||||||||  || ||||| ||||||||| |||||||||| ||||||||||    
T  23404785 ataatgatatcgtgtttgttatcatgtgcacatcaaacacatgataatattaatgtttatcatgtccttatcatatcttatctttatc 23404872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 611
Target Start/End: Complemental strand, 31799463 - 31799401
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatc 611  Q
    ||||||| ||||||||||| ||||||| |||| |  ||||| |||||||||||| ||||||||    
T  31799463 aaataatactatcatatttcttatcatatgtgcataaaacatatgatatgataagtgtctatc 31799401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 37970448 - 37970550
Alignment:
Q  531 ccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    |||||| ||||||| |||||| |||||||||||| |||||||||| ||||| ||||||  ||||||| ||||||||| |||| ||||| ||||||||| |    
T  37970448 ccaaacgcatgataggataaaataatgctatcatcttttttatcaagtgtgcaccaaatgcatgataggataaatgtttatcctgtcactatcatatctt 37970547  T
Q  630 atc 632  Q
    |||    
T  37970548 atc 37970550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 549 - 658
Target Start/End: Original strand, 29127431 - 29127539
Alignment:
Q  549 aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaa 648  Q
    ||||||||||||||| ||||| |||| ||||| ||||||| ||||| | ||||||||| |||| | ||| |||||||||||||| ||||| | ||||| |    
T  29127431 aaataatgctatcatcttttt-atcaagtgtgcaccaaacgcatgacaagataaatgtttatcctatcactatcatatcatatccttatccagtttctta 29127529  T
Q  649 tcctatcatg 658  Q
    ||||||||||    
T  29127530 tcctatcatg 29127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 655
Target Start/End: Complemental strand, 41481907 - 41481787
Alignment:
Q  534 aacacatgatatgataaat--aatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatat 631  Q
    ||||||||||||||||||   |||| |||||| |||||||||||||||  ||||||| ||||| | ||||| |||||||||||||| || | |||| |||    
T  41481907 aacacatgatatgataaaataaatgttatcatcttttttatcatgtgt--accaaacgcatgacaggataagtgtctatcatgtcacta-cctatcctat 41481811  T
Q  632 ctttatctattttctaatcctatc 655  Q
    ||||||  ||||||||||| ||||    
T  41481810 ctttatacattttctaatcatatc 41481787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 637
Target Start/End: Original strand, 44108478 - 44108556
Alignment:
Q  558 tatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttat 637  Q
    |||||| ||| |||||||||| ||||||| ||||||||| ||||||||| |||| ||||| ||||||||| |||||||||    
T  44108478 tatcatctttcttatcatgtgagtaccaa-cacatgataggataaatgtatatcttgtcactatcatatcctatctttat 44108556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 638
Target Start/End: Original strand, 28109241 - 28109349
Alignment:
Q  531 ccaaacacatgatatgataaa-taatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||| | ||||||||||| |||| |||||| |||| ||||||||| |  |||||| |||| ||||||||||||| ||| | || | ||||||||| |    
T  28109241 ccaaacatacgatatgataaaataattctatcacatttcttatcatgtatacaccaaatacataatatgataaatgtttattacgttactatcatatctt 28109340  T
Q  630 atctttatc 638  Q
    |||||||||    
T  28109341 atctttatc 28109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 34866288 - 34866231
Alignment:
Q  569 ttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatat 626  Q
    |||||||||| | | ||||||||||||| ||| ||||| |||||||||||||||||||    
T  34866288 ttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgtcattatcatat 34866231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 23318420 - 23318319
Alignment:
Q  531 ccaaacacatgatatgat-aaataatgctatcatattttttatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcat 629  Q
    ||||||| |||||| ||| |||| |||||||||||||||| |||||||||  ||||||||   |||||||||||||| ||||  || | ||||||||| |    
T  23318420 ccaaacatatgatacgattaaatcatgctatcatattttt-atcatgtgttaaccaaacatgggatatgataaatgtttatccagttactatcatatcct 23318322  T
Q  630 atc 632  Q
    |||    
T  23318321 atc 23318319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1822 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 616 - 529
Alignment:
Q  570 tatcatgtgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaatcctatcatg 658  Q
    ||||||||||| ||||||||||||||| |||| |||| |||||||||| || |||||| |||| ||||| ||||| | |||||||||||    
T  616 tatcatgtgtgcaccaaacacatgataggatagatgt-tatcatgtcactaccatatcctatccttatccatttttttatcctatcatg 529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 577 - 649
Target Start/End: Original strand, 11309 - 11381
Alignment:
Q  577 tgtgtaccaaacacatgatatgataaatgtctatcatgtcattatcatatcatatctttatctattttctaat 649  Q
    |||| ||||||||||||| | ||||||||| |||||||||| |||||||  ||||||||||| ||||||||||    
T  11309 tgtgcaccaaacacatgacaagataaatgtttatcatgtcactatcatactatatctttatcaattttctaat 11381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University