View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450-Insertion-4 (Length: 534)
Name: NF4450-Insertion-4
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Complemental strand, 9245532 - 9245004
Alignment:
| Q |
8 |
ccacgaaggtcgtaagggtgtcaaattcattcaaaggacacgtggaactgataattcagcagcaaaaattcatgttcattattgattttagctcc--gca |
105 |
Q |
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| T |
9245532 |
ccacgaaggtcgtaagggtgtcaaattcattcaaaggacacgtggaattgataattcaacagcaaaaattcatgttcattattgattttagctccatgca |
9245433 |
T |
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| Q |
106 |
ttgaaaacaactatatttttggagcatgatgaaagaatgtgtgtataagagaaatggaaatggaaatagaaacgttgtaaaacaggagaatccaagtaaa |
205 |
Q |
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| T |
9245432 |
ttgaaaacaactatattttcggagcatgatgaaagaatgtgtgtataagagaaatggaaatggaaatagaaacgttgtaaaataggagaatccaagtcaa |
9245333 |
T |
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| Q |
206 |
atatgagacctcacgtacacccatgaggaccgacccaaggtttaattccaaaacgcttcattataaaatttgttttaaacctcttgatatattgggccgg |
305 |
Q |
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| T |
9245332 |
atatgagacctcacgtacatccatgaggaccgacctaaggtttaattccaaaacgcttcattataaaatttgttttaaacctcttgatatgttgggccgg |
9245233 |
T |
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| Q |
306 |
tcctatcaacggaaactaactcgaatacaatggtagaatagccgaatacaacaattagggctatatttgtagtatatgatgttttggctagtaccatact |
405 |
Q |
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| T |
9245232 |
tcctatcaacggaaactaactcgaataccatggtagaatagccgaatacaacaattagggctacatttgtagtatatgatgttttggctagtaccatact |
9245133 |
T |
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| Q |
406 |
acctctgccaaaaaatatccattgtacatatttttattgacaaatacaaataaatcaatcctaccatttttctcataagttaaatttatatatctacttt |
505 |
Q |
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| T |
9245132 |
acctctgccaaaatatatccattgtacatatttttattgacaaatacaaataaatcaatcctaccatttttctcataagttaaatttatatatctacttt |
9245033 |
T |
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| Q |
506 |
tcaattcaattatcttttcatcaatttag |
534 |
Q |
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| T |
9245032 |
tcaattcaattatcttttcatcaatttag |
9245004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 9862196 - 9862252
Alignment:
| Q |
249 |
aattccaaaacgcttcattataaaatttgttttaaacctcttgatatattgggccgg |
305 |
Q |
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| T |
9862196 |
aattccaaaaggcttcattataaaatttgctttaagcctcttgacatgttgggccgg |
9862252 |
T |
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