View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450-Insertion-5 (Length: 476)
Name: NF4450-Insertion-5
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 110 - 476
Target Start/End: Complemental strand, 7478658 - 7478293
Alignment:
| Q |
110 |
ttctcttttacataattctttctcttttcgctcacttaatcaatgcttctgaaacaccggttaacatgacctttaaataatcaacatctatttagacgtg |
209 |
Q |
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| T |
7478658 |
ttcttttttacatattttttt-tcttttcgttcacttaatcggtgcttccgaaataccggttaacatgacctttaaataatcaacatctatttagacgcg |
7478560 |
T |
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| Q |
210 |
gtgctggatgattgtcatgctggaaggttagttaaaggatgaaccggttttgtctatgacatgaagaatcatgctatgatgtttgcttgctcctttgcaa |
309 |
Q |
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| T |
7478559 |
gtgctggatgattgtcatgctggaaggttagttaaaggatgaaccggttttgtctatgacatgaagaatcatgctatgatgtttgcttgctcctttgcaa |
7478460 |
T |
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| Q |
310 |
tttcattattatggtcatatccgaatcaaaagctacatttttatcctagttattaatcaaatttaaactccaggtgaaactaaacttagatcatttggct |
409 |
Q |
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| T |
7478459 |
tttcattattatggtcatatccgaatcaaaagctacatttttatcttagtgattaatcaaatttaaactccaggtgaaactaaacttagatcatttggct |
7478360 |
T |
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| Q |
410 |
ctagaattcgagtccaaatgaaaaacacttagttgttgatggggttacgtcgttgaatgtatataat |
476 |
Q |
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| T |
7478359 |
ctcgaattcgagttcaaatgaaaaacacttggttgttgatggagttatgtcgttgaatgtatataat |
7478293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 7478761 - 7478724
Alignment:
| Q |
7 |
aagaaaatgttaacggttgctctcaaacacaggttaag |
44 |
Q |
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| T |
7478761 |
aagaaaatgttaatggttactctcaaacacaggttaag |
7478724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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