View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450-Insertion-6 (Length: 432)
Name: NF4450-Insertion-6
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Original strand, 6174040 - 6174447
Alignment:
| Q |
22 |
taataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcatatacttaa |
121 |
Q |
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| T |
6174040 |
taataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcatatacttaa |
6174139 |
T |
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| Q |
122 |
aaaccagtgattgttctgtaaacattggtttaaataataaggaaatgcattctttgtagcatgagtgtatgatttcgagtttaaacattaaattaagatg |
221 |
Q |
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| T |
6174140 |
aaaccagtgattgttctgtaaacattggtttaaataataaggaaatgcattctttgtagcatgagtgtatgatttcgagtttaaacattaaattaagatg |
6174239 |
T |
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| Q |
222 |
atgatgtgcctcatgtggtatacgacacgtagtgtagagcgtgcagctctagtccactcgactgacatggcagaaacaggaacacgattagaagcaaaac |
321 |
Q |
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| T |
6174240 |
atgatgtgcctcatgtggtatacgacacgtagtgtagagcgtgcagctctagtccactcgactgacatggcagaaacaggaacaccattagaagcaaaac |
6174339 |
T |
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| Q |
322 |
agcaataacaagaggaagaacagtagcaagactgtttatttgtggttcttaaggttaaaaatagttacttatccatccgtcatttcccgtcttatattaa |
421 |
Q |
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| T |
6174340 |
agc---aacaagaggaagaacagtagcaagactgtttatttgtggttcttaaggttaaaaatagttacttatccatccgtcatttcccgtcttatattaa |
6174436 |
T |
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| Q |
422 |
ctactcctttg |
432 |
Q |
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| T |
6174437 |
ctactcctttg |
6174447 |
T |
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