View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450-Insertion-7 (Length: 339)
Name: NF4450-Insertion-7
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 4784703 - 4784394
Alignment:
| Q |
26 |
ttaactcacgtgacattttataatagttcatgttattaagagtatcaattaatttccctcnnnnnnnnnnnnnnnnnngtgtatcaattaatatcatgca |
125 |
Q |
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| T |
4784703 |
ttaactcacgtgacattttataatagttcatgttattaagagtatcaattaatttccctcaaaaaaaataaaaa----gtgtatcaattaatatcatgca |
4784608 |
T |
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| Q |
126 |
gtgagacataattaatgatgcaaacacaacaaacttactacaatcgttggtctgatccttaacattagtgacagctactttcaacctccaatccaaggat |
225 |
Q |
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| T |
4784607 |
gtgatacgtaattaatgatgcaaacacaacaaacttactacaatcgttggtctgatccttaacattagtgacagctcctttcaacctccaatccaaggat |
4784508 |
T |
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| Q |
226 |
gaaggagcagcattgcatgatgatgaggcaatatcattcaccttcattgtgtcattgatcatggacatgtcaagcttgtgtaacattctttctttaaact |
325 |
Q |
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| T |
4784507 |
gaaggagcagcattgcatgatgatgaggcaatatcattcaacttcattgtgtcattgatcatggacatgtcaagcttgtgtaacattctttctttaaact |
4784408 |
T |
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| Q |
326 |
cttgggggctccaa |
339 |
Q |
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| T |
4784407 |
cttgggggctccaa |
4784394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 4781541 - 4781414
Alignment:
| Q |
209 |
acctccaatccaaggatgaaggagcagcattgcatgatgatgaggcaatatcattcaccttcattgtgtcattgatcatggacatgtcaagcttgtgtaa |
308 |
Q |
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| T |
4781541 |
acctccaatccaaggatgaaggagcacta---catgatgataagtgaacgtcgttcaccttcattgtgtcaatgtccgtgggcatgtcaatgttgtgtaa |
4781445 |
T |
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| Q |
309 |
cattctttctttaaactcttgggggctccaa |
339 |
Q |
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| T |
4781444 |
gtatctttcttgaaactcctcggagctccaa |
4781414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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