View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450-Insertion-9 (Length: 328)
Name: NF4450-Insertion-9
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 29519218 - 29518901
Alignment:
| Q |
13 |
tttgtatacacgccatgattagtt--atcatctaaattaattctacaatactaaacaaattaaatgcaggaggagcaagtggtataggcttggagacagc |
110 |
Q |
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| T |
29519218 |
tttgtatacacgccatgattagttttatcatctaaattcattctacaatactaaacaaattaaatgcaggaggagcaagtggtataggcttggagacagc |
29519119 |
T |
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| Q |
111 |
acgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatactccaagacaacgagtct |
210 |
Q |
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| T |
29519118 |
acgagtcttggctctccgaaaggtgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatactacaagacaacgagtct |
29519019 |
T |
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| Q |
211 |
gctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatcttcctctcaacatcttaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519018 |
gctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatcttcctctcaacatcttaa |
29518919 |
T |
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| Q |
311 |
tgtatgttcatcatcctc |
328 |
Q |
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| T |
29518918 |
tgtatgttgatcatcctc |
29518901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 318
Target Start/End: Original strand, 40100867 - 40101112
Alignment:
| Q |
73 |
aatgcaggaggagcaagtggtataggcttggagacagcacgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaa |
172 |
Q |
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|||||||||||||||||||||||||| ||||||||| || |||| |||||||| | |||| ||||| ||||| || ||||||||||| || |||||| |
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| T |
40100867 |
aatgcaggaggagcaagtggtatagggttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgcag |
40100966 |
T |
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| Q |
173 |
aggaagctaaacaaattatactccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttga |
272 |
Q |
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| T |
40100967 |
aggaagccaaacaacaaataacacaagagaacaaatctgcacgagtggacataatgaaacttgacctatgctcaacaaagtctgtccgatcattcgtcga |
40101066 |
T |
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| Q |
273 |
aaacttcctcgctctcgatcttcctctcaacatcttaatgtatgtt |
318 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||| |||| |
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| T |
40101067 |
caacttcattgctcttgatcttcctctcaacatcttaatgtttgtt |
40101112 |
T |
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