View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4450_high_2 (Length: 344)
Name: NF4450_high_2
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 24414699 - 24415027
Alignment:
| Q |
1 |
tattacatttaattaattaatttt-ttcaagttattaatattgttgaagtgtcagcattagggtagtgtatgtgttccattgcttcatagcattcagttg |
99 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24414699 |
tattacatttaattattttttttttttcaagttattaatattgttgaagtgtcagcattagggtagtgtatgtgtgccattgcttcatagcattcagttg |
24414798 |
T |
|
| Q |
100 |
agtagccgacctcactaaaattattaaataaatgggacnnnnnnngcactaaataaataacttcagaagagacatacttggaacatagttctactgtcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24414799 |
agtagccgacctcactaaaattattaaataaatgggacaagaaaagcactaaataaataacttcagaagag-----------acatagttctactgtcat |
24414887 |
T |
|
| Q |
200 |
ctgacataaacatgtgcagttatatacaaaaaccaacctatgctgtgctttcttatttgtaattatgc-----nnnnnnncagtgtggatttgattttag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24414888 |
ctgacataaacatgtgcagttatatacaaaaaccaacctatgctgtgctttcttatttgtaattatgcaaaaaaaaaaaacagtgtggatttgattttag |
24414987 |
T |
|
| Q |
295 |
tttagtttacattacttatatactgacatttatgcctatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24414988 |
tttagtttacattacttatatactgacatttatgcctatg |
24415027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University