View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450_low_1 (Length: 499)
Name: NF4450_low_1
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 18669435 - 18669906
Alignment:
| Q |
15 |
ggtggccgttggatcgagattggttggcctatgttttattttagattaattttaaggattatataagtatttatgtttaaatttggagtattcaatcttg |
114 |
Q |
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| T |
18669435 |
ggtggtcgttggatcgagattggttggcctatgttttattttagattaattttaaggattatataagtatttatgtttaaatttggagtattcgatcttg |
18669534 |
T |
|
| Q |
115 |
atcaaatgatcacctgtgtcatgattgcataaatgcgcgaggtcttgatcacggagagtccaaattcattccaattacatcatatatttaatttttaagt |
214 |
Q |
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||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18669535 |
atctaatggtcacctgtgtcatgattgcgtaaatgcgcgaggtcttgatcacggagaatccaaattccttccaattacatcatatatttaatttttaagt |
18669634 |
T |
|
| Q |
215 |
gtatattacatatgaatgcttgttgaaaaattacttcaacaatatttaatagaggtcattttgt-tggagcatagatgatcaaacttctcttggattata |
313 |
Q |
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| T |
18669635 |
gtatattacatatcaatgcttgttgaaaaattacttcaacaatatttagtagaggtcattttgtctggagcatagatgatcaaacttctcttggattata |
18669734 |
T |
|
| Q |
314 |
tttacagtaagctactttttctatgatcaaaattcatagtctctaaagaaaaaacacaagaaagtaatggatattttgtacaccttgttcactttcatag |
413 |
Q |
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| T |
18669735 |
tttacagtaagctactttttctatgatcaaaattcatagtctctaaagaaaaaacacaagaaagtaatggatattttgtacaccttgttgactttcatag |
18669834 |
T |
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| Q |
414 |
ccttcttttttctagcaattttcatagctatatgtttcatcatgatgacaatcttcaaaggaaaatccatag |
485 |
Q |
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| T |
18669835 |
ccttcttttttctagcaattttcctagccatatgtttcatcatgatgacaatcttcaaaggaaaatccatag |
18669906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 485
Target Start/End: Complemental strand, 13115997 - 13115532
Alignment:
| Q |
21 |
cgttggatcgagattggttggcctatgttttattttagattaattttaaggattatataagtatttatgtttaaatttggagtattcaatcttgatcaaa |
120 |
Q |
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|||||||||||||||| |||| ||| |||||||| || |||| |||| || ||||||||||| |||||||||||||||| ||||||||||||||| || |
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| T |
13115997 |
cgttggatcgagattgattggtctacgttttattacagtttaaagttaaagaatatataagtatctatgtttaaatttggaatattcaatcttgatctaa |
13115898 |
T |
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| Q |
121 |
tgatcacctgtgtcatgattgcataaatgcgcgaggtcttgatcacggagagtccaaattcattccaattacatcatatatttaatttttaagtgtatat |
220 |
Q |
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| T |
13115897 |
aggtcacctgtgtcatgattgcgtaaatgcgtgaggtcctgatcatggagaatccaaattccttccaattacatcatatatttaattattaagtatatat |
13115798 |
T |
|
| Q |
221 |
tacatatgaatgcttgttgaaaaattacttcaacaatatttaatagaggtcattttgttggagcatagatgatcaaacttctcttggat----------- |
309 |
Q |
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||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
13115797 |
tacatatcattgcttgctgaaaaattacttcaacaatatttaatagaggtcattttgt----------ctgatagaacttcccttggattagttatagaa |
13115708 |
T |
|
| Q |
310 |
tatatttacagtaagctactttttctatgatcaaaattcatagtctctaaag-aaaaaacacaagaaagtaatggatattttgtacaccttgttcacttt |
408 |
Q |
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|||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
13115707 |
tatacatacaataagctaccttttctatgatcaaaattcatagtctctaaagaaaaaaacacaagaaa-aaatggatattttgtacaccttgttgacttc |
13115609 |
T |
|
| Q |
409 |
catagccttcttttttctagcaattttcatagctatatgtttcatcatgatgacaatcttcaaaggaaaatccatag |
485 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13115608 |
catagccttcttttttctagcaattttcctagccatatgtttcatcatgatgacaatcttcaaaggaaaatccatag |
13115532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 13106164 - 13106058
Alignment:
| Q |
379 |
aatggatattttgtacaccttgttcactttcatagccttcttttttctagcaattttcatagctatatgtttcatcatgatgacaatcttcaaaggaaaa |
478 |
Q |
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||||||| ||||||| ||| |||| ||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13106164 |
aatggatgttttgtataccatgttgactctcatagccttctcttctctagcaattttcctagctatatgtttcatcatgatgacaatcttcaaaggaaaa |
13106065 |
T |
|
| Q |
479 |
tccatag |
485 |
Q |
| |
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|| |||| |
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| T |
13106064 |
tcaatag |
13106058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 13100372 - 13100266
Alignment:
| Q |
379 |
aatggatattttgtacaccttgttcactttcatagccttcttttttctagcaattttcatagctatatgtttcatcatgatgacaatcttcaaaggaaaa |
478 |
Q |
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||||||| ||||||||||| | || ||| |||||||||||| | |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
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| T |
13100372 |
aatggatgttttgtacaccattttgactctcatagccttctctcttctagcaattttcctagccatatgtttcatcttgatgacaatcttcaaaggaaaa |
13100273 |
T |
|
| Q |
479 |
tccatag |
485 |
Q |
| |
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|| |||| |
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|
| T |
13100272 |
tcaatag |
13100266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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