View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4450_low_2 (Length: 394)

Name: NF4450_low_2
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4450_low_2
NF4450_low_2
[»] chr1 (9 HSPs)
chr1 (20-389)||(33114941-33115310)
chr1 (20-139)||(33108903-33109022)
chr1 (23-129)||(16223196-16223302)
chr1 (23-132)||(16175447-16175556)
chr1 (20-129)||(16183803-16183912)
chr1 (23-129)||(30620966-30621072)
chr1 (245-318)||(33109131-33109204)
chr1 (229-286)||(16175290-16175347)
chr1 (74-123)||(9700032-9700081)
[»] chr7 (3 HSPs)
chr7 (23-141)||(38893006-38893124)
chr7 (212-348)||(38884006-38884142)
chr7 (23-141)||(38883814-38883932)
[»] chr3 (1 HSPs)
chr3 (212-297)||(37315994-37316079)
[»] chr5 (1 HSPs)
chr5 (80-120)||(28817935-28817975)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 33114941 - 33115310
Alignment:
Q  20 cttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33114941 cttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgca 33115040  T
Q  120 tttcccttgttaccaaattgcttggccgtgtttattactatgaaggcagtaacaaacctggttctctaccagaaaatgtttctgctgcaatcaatggtgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115041 tttcccttgttaccaaattgcttggccgtgtttattactatgaaggcagtaacaaacctggttctctaccagaaaatgtttctgctgcaatcaatggtgt 33115140  T
Q  220 tgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgcttatggtc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115141 tgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgcttatggtc 33115240  T
Q  320 atagcttcacttgcttctggtctctcttttgggaaagatcccaaaactgttatggctaccctttgcttct 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33115241 atagcttcacttgcttctggtctctcttttgggaaagatcccaaaactgttatggctaccctttgtttct 33115310  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 33108903 - 33109022
Alignment:
Q  20 cttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgca 119  Q
    ||||||||||| ||||| || ||||||||   ||| ||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  33108903 cttaatgcactcgatgtggcgaagacacaaatgtaccatttcacagcaattgtgattgctggaatgggttttttcactgatgcctatgatctcttttgca 33109002  T
Q  120 tttcccttgttaccaaattg 139  Q
    |||||||||| || ||||||    
T  33109003 tttcccttgtcacaaaattg 33109022  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 16223196 - 16223302
Alignment:
Q  23 aatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgcattt 122  Q
    |||||||||||||| ||||||||||| | |||||| || ||| ||||||| |||||||||||||| || ||||||||| | |||||||| ||||||||||    
T  16223196 aatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttctgcattt 16223295  T
Q  123 cccttgt 129  Q
    |||||||    
T  16223296 cccttgt 16223302  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 16175556 - 16175447
Alignment:
Q  23 aatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgcattt 122  Q
    |||||||| ||||| || |||||||| | ||| ||||| ||| ||||||| || |||||||||||||| ||||||||| | |||||||| ||||||||||    
T  16175556 aatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctgcattt 16175457  T
Q  123 cccttgttac 132  Q
    | ||||||||    
T  16175456 ctcttgttac 16175447  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 16183803 - 16183912
Alignment:
Q  20 cttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgca 119  Q
    ||||||||||| ||||| || ||||| || | ||| ||||| ||| ||||||| || ||||||||||| || ||||||||| | |||||||| |||||||    
T  16183803 cttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttctgca 16183902  T
Q  120 tttcccttgt 129  Q
    ||||||||||    
T  16183903 tttcccttgt 16183912  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 30621072 - 30620966
Alignment:
Q  23 aatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgcattt 122  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| ||| | || ||||| |||||||| |    
T  30621072 aatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcatat 30620973  T
Q  123 cccttgt 129  Q
    |||||||    
T  30620972 cccttgt 30620966  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 33109131 - 33109204
Alignment:
Q  245 caacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgcttatggt 318  Q
    ||||||||||| |||||||||||||||||| | ||||| |||  ||||||||| || |||||||||||||||||    
T  33109131 caacttttcttcggttggcttggtgacaaattaggaaggaaaaaagtttatggtataacccttatgcttatggt 33109204  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 16175347 - 16175290
Alignment:
Q  229 tggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaa 286  Q
    |||| |||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||    
T  16175347 tggaacactagcaggccaattattctttggttggcttggggacaaaatgggaagaaaa 16175290  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 9700081 - 9700032
Alignment:
Q  74 attgctggaatgggttttttcactgattcctatgatctcttctgcatttc 123  Q
    |||||||| ||||| || ||||||||| |||||||||| |||||||||||    
T  9700081 attgctggcatgggattcttcactgatgcctatgatctgttctgcatttc 9700032  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 38893006 - 38893124
Alignment:
Q  23 aatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgcattt 122  Q
    |||||||||||||| || || || || |||||||| || || |||||  |||||||||||||||| || || |||||| |||||||||| |||||||| |    
T  38893006 aatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgttctgcatat 38893105  T
Q  123 cccttgttaccaaattgct 141  Q
    ||||||||||||| |||||    
T  38893106 cccttgttaccaagttgct 38893124  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 348
Target Start/End: Original strand, 38884006 - 38884142
Alignment:
Q  212 aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgc 311  Q
    |||||||| |||||| ||||| ||||  |||| |||||||||||||| ||||||||||| || ||||| || |||  ||| ||||| |||||||| |||     
T  38884006 aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatga 38884105  T
Q  312 ttatggtcatagcttcacttgcttctggtctctcttt 348  Q
    | ||||| ||   |||| ||| ||||||||| |||||    
T  38884106 tgatggttatctgttcaattggttctggtctttcttt 38884142  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 38883814 - 38883932
Alignment:
Q  23 aatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctcttctgcattt 122  Q
    ||||| |||||||| || || ||||| ||||| ||||| ||||||||  |||| ||||| ||||| || || || ||| |||||||||| |||||  | |    
T  38883814 aatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctgtgtat 38883913  T
Q  123 cccttgttaccaaattgct 141  Q
    |||||||||| || |||||    
T  38883914 cccttgttacaaagttgct 38883932  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 37316079 - 37315994
Alignment:
Q  212 aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatgg 297  Q
    |||||||||||| || ||||  | || ||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  37316079 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatgg 37315994  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 28817975 - 28817935
Alignment:
Q  80 ggaatgggttttttcactgattcctatgatctcttctgcat 120  Q
    |||||||| |||||||||||| | |||||||||||||||||    
T  28817975 ggaatgggatttttcactgatgcatatgatctcttctgcat 28817935  T

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