View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4450_low_5 (Length: 242)
Name: NF4450_low_5
Description: NF4450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4450_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24414559 - 24414336
Alignment:
| Q |
1 |
ttgtttcatcaatttgacatgagggaatacaaaaagaccttaagttatgataaatcaaaaggtaagattttattgtaaaagaagaattactagtgaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
24414559 |
ttgtttcatcaatttgacatgagggaatacaaaaagaccttaagttatgataaatcaaaaggtatgattttattgtaaaaaaataattactagtgaattt |
24414460 |
T |
|
| Q |
101 |
cgattggtaagataagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414459 |
cgattggtaagagtagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccc |
24414360 |
T |
|
| Q |
201 |
tgtcaagagatttcctggtgtagc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
24414359 |
tgtcaagagatttcctggtgtagc |
24414336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 24419516 - 24419625
Alignment:
| Q |
115 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419516 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
24419615 |
T |
|
| Q |
215 |
ctggtgtagc |
224 |
Q |
| |
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|||||||||| |
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|
| T |
24419616 |
ctggtgtagc |
24419625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 24379401 - 24379279
Alignment:
| Q |
102 |
gattggtaagataagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccct |
201 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| ||||||||| |
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|
| T |
24379401 |
gattggtaagagtagtacctgatatcctccaaccaaatgaatgataatgcaaacattggcaaggtcaataagccagtaaggctcataaaacccaaaccct |
24379302 |
T |
|
| Q |
202 |
gtcaagagatttcctggtgtagc |
224 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
24379301 |
gtcaagagatttcctggtgtagc |
24379279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 24402192 - 24402083
Alignment:
| Q |
115 |
agtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttc |
214 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||||| |
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|
| T |
24402192 |
agtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttc |
24402093 |
T |
|
| Q |
215 |
ctggtgtagc |
224 |
Q |
| |
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|||||||||| |
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|
| T |
24402092 |
ctggtgtagc |
24402083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 42362601 - 42362500
Alignment:
| Q |
117 |
tacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcct |
216 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||| ||| |||| |||| |||||| |||||||| || ||| |||||||||| ||||||||||| |||||| |
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| T |
42362601 |
tacctgatatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcct |
42362502 |
T |
|
| Q |
217 |
gg |
218 |
Q |
| |
|
|| |
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|
| T |
42362501 |
gg |
42362500 |
T |
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