View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4451-Insertion-2 (Length: 713)
Name: NF4451-Insertion-2
Description: NF4451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4451-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 350 - 711
Target Start/End: Complemental strand, 50894161 - 50893798
Alignment:
| Q |
350 |
ccgttcaaacatgatgtttattggattaggttgaaagtttaggtttgatgaagtgtgaatttaatcaataactttggtgttat--caatgttacaaattc |
447 |
Q |
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| T |
50894161 |
ccgttcaaatatgatgtttattggattaggttgaaagtttaggtttgatgaagtgcggatttaatcaataactttggtgttatatcaatgttacaaattc |
50894062 |
T |
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| Q |
448 |
agaggtatgtccattccgtacaataaaatataattttgtagattttgtatactttatcgttttagattattaagatggatattgtaaatgtgtgtgcata |
547 |
Q |
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| T |
50894061 |
agaggtatgcccattccgtacaataaaatataattttgtagattttgtatactttatcgttttagattattaagatggatattgtaaatgtgtgtgcata |
50893962 |
T |
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| Q |
548 |
ttcatcattgattattttttgtataaatgtggttggttattctgaaatgtgctattcaaatattgagacaactcaagatggcacagtagacattcacaat |
647 |
Q |
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| T |
50893961 |
ttcgtcattgattattttttgtataaatcttgttggttgttctgaaatgtgctattcaaatattgagacagctcaagatggcacagtagacattcacatt |
50893862 |
T |
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| Q |
648 |
ttatgtggcttgtttaccgttttctcgaaacagaaagaaagaagaagaaatagtgaaataggca |
711 |
Q |
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| T |
50893861 |
ttatgtggcttgtttaccgttttctcgaaacagaaagaaagaagaagaaatcgtgaaataggca |
50893798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 50894505 - 50894244
Alignment:
| Q |
7 |
aattagatatttgttttatatgtcatgcaaattagatataaatagggtgaagatttgaaccctacgtttcatacttgtctatgagttagacnnnnnnnaa |
106 |
Q |
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| T |
50894505 |
aattagatatctgttttatatgtcatgcaaattagatataaatagggtgaagatttgaaccctacgtttcatacttgtctatgagttagactttttttaa |
50894406 |
T |
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| Q |
107 |
ttacaaaaagtagtgatggattatttggtttcactcaccactttttaaattttcgacttcttttcgacctatctaagagaattgtttaggtcaattttgt |
206 |
Q |
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| T |
50894405 |
ttacaaaaaatagtgatggattatttggtttcactcaccactttttaaattttcgacttcttttcgacctatctaagagaattgtttaggtcaattttgt |
50894306 |
T |
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| Q |
207 |
ttcgaaatcacatccct-aaattgttgttatctttgttttagttaaataaaagatttacgcg |
267 |
Q |
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| T |
50894305 |
ttcgaaatcacatccctaaaattgttgttatctttgttttagttaaataaaagatttacgcg |
50894244 |
T |
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