View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4451_high_2 (Length: 610)
Name: NF4451_high_2
Description: NF4451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4451_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 25 - 583
Target Start/End: Complemental strand, 592551 - 591993
Alignment:
| Q |
25 |
atcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttggt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
592551 |
atcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctgagacttgattgtttgt |
592452 |
T |
|
| Q |
125 |
tactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592451 |
tactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaaccaaatttacaggactatttctcaaagtg |
592352 |
T |
|
| Q |
225 |
gggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592351 |
gggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgccttttgggtcgtgaagttcgtgacaagctc |
592252 |
T |
|
| Q |
325 |
ttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgtg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592251 |
ttcgatgatgtctctgcattgttccacgatctcgataatggaatgcttccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgtg |
592152 |
T |
|
| Q |
425 |
acaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattttcacgaaaaagtgccgacaaatcagaggaagacatgctgcagtgcttcattga |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
592151 |
acaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatcttcacgaaaaagtgccgacaaatcagagaacgacatgctgcagtgcttcattga |
592052 |
T |
|
| Q |
525 |
ctcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592051 |
ctcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
591993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 25 - 583
Target Start/End: Original strand, 579877 - 580434
Alignment:
| Q |
25 |
atcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttggt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
579877 |
atcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttgt |
579976 |
T |
|
| Q |
125 |
tactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtg |
224 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
579977 |
ttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgttattt-ctcaaacatgaaccaaatttacaggactatttctcaaagtg |
580075 |
T |
|
| Q |
225 |
gggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
580076 |
gggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagctc |
580175 |
T |
|
| Q |
325 |
ttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgtg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
580176 |
ttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctcttcccatacctgccaattccggctcacaggcgccgtg |
580275 |
T |
|
| Q |
425 |
acaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattttcacgaaaaagtgccgacaaatcagaggaagacatgctgcagtgcttcattga |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
580276 |
acaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatcttcacgaaaaattgccgacaaatcagaggacgacatgctgcagtgcttcattga |
580375 |
T |
|
| Q |
525 |
ctcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580376 |
ctcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
580434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 583
Target Start/End: Original strand, 37434150 - 37434221
Alignment:
| Q |
512 |
agtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
583 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
37434150 |
agtgcttcattgactcaaaatacaaagacaaccgccttacaaccgaagctgaagtcacaggactcctcattg |
37434221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University