View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4451_high_7 (Length: 301)

Name: NF4451_high_7
Description: NF4451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4451_high_7
NF4451_high_7
[»] chr2 (10 HSPs)
chr2 (1-291)||(37182218-37182508)
chr2 (156-225)||(13800846-13800915)
chr2 (165-225)||(11952943-11953003)
chr2 (162-214)||(21666041-21666093)
chr2 (163-242)||(11913055-11913134)
chr2 (156-203)||(29694084-29694131)
chr2 (156-214)||(45156355-45156413)
chr2 (156-225)||(28425877-28425946)
chr2 (166-214)||(21190934-21190982)
chr2 (166-214)||(30175529-30175577)
[»] chr6 (2 HSPs)
chr6 (153-214)||(20611501-20611562)
chr6 (149-242)||(4036779-4036870)
[»] chr1 (2 HSPs)
chr1 (151-242)||(39135042-39135133)
chr1 (166-214)||(5128255-5128303)
[»] chr4 (5 HSPs)
chr4 (150-242)||(22315787-22315879)
chr4 (155-198)||(22076987-22077030)
chr4 (167-214)||(36363218-36363265)
chr4 (166-214)||(24404209-24404256)
chr4 (162-214)||(36118806-36118858)
[»] chr7 (7 HSPs)
chr7 (159-214)||(7398159-7398214)
chr7 (154-216)||(26918029-26918091)
chr7 (171-225)||(20152915-20152969)
chr7 (156-203)||(27237776-27237823)
chr7 (175-213)||(36903643-36903681)
chr7 (154-214)||(12419833-12419893)
chr7 (259-291)||(23858883-23858915)
[»] chr8 (9 HSPs)
chr8 (157-215)||(38009489-38009547)
chr8 (156-203)||(15078456-15078503)
chr8 (154-214)||(5973369-5973429)
chr8 (159-198)||(41063077-41063116)
chr8 (156-214)||(7944774-7944832)
chr8 (156-210)||(39332586-39332640)
chr8 (168-237)||(5721437-5721506)
chr8 (156-193)||(25562042-25562079)
chr8 (162-242)||(8645920-8646000)
[»] scaffold1320 (1 HSPs)
scaffold1320 (156-203)||(1052-1099)
[»] chr5 (5 HSPs)
chr5 (168-214)||(1366852-1366898)
chr5 (156-214)||(24395445-24395503)
chr5 (175-236)||(4931860-4931921)
chr5 (155-214)||(11242659-11242718)
chr5 (156-214)||(15639157-15639215)
[»] chr3 (1 HSPs)
chr3 (156-214)||(28689806-28689864)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 37182218 - 37182508
Alignment:
Q  1 aaaaatactaaggttaagtcacaacgaaaatnnnnnnnnttcgaccgtatagttcaatccaacgagagatctaaactatggttcaattgaatcaatgagt 100  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37182218 aaaaatactaaggttaagtcacaacgaaaatataaaaaaatcgaccgtatagttcaatccaaggagagatctaaactatggttcaattgaatcaatgagt 37182317  T
Q  101 tcaactatggtttgttttattcttaataattacaccctttaatcactattataagcagggtcggaccttggggtgtgcaaagagctcaatggagctggac 200  Q
    |||| ||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37182318 tcaattatggtttgttttatgcttaataattacaccttctgatcactattataagcagggtcggaccttggggtgtgcaaagagctcaatggagctggac 37182417  T
Q  201 ctctccaaggtatgagcgtcaaaaaggaaattatagctcagt-gtactacactaaataaataaataaaaattccttattctctttctctctg 291  Q
    ||| |||||||| ||||||||||||||||||||||||||||| ||||||| |  | |||||||||||||||| |||||||||||||||||||    
T  37182418 ctccccaaggtaagagcgtcaaaaaggaaattatagctcagtggtactac-cccactaaataaataaaaatttcttattctctttctctctg 37182508  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 13800915 - 13800846
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaa 225  Q
    |||||||||||||||||||||||||| |||||||||||| |||  || |||||||||||||| |||||||    
T  13800915 cagggtcggaccttggggtgtgcaaaaagctcaatggagttgggtctttccaaggtatgagcctcaaaaa 13800846  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 11953003 - 11952943
Alignment:
Q  165 accttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaa 225  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||||||||| |||||||    
T  11953003 accttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgagcctcaaaaa 11952943  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 21666093 - 21666041
Alignment:
Q  162 cggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||||||||||||||||| |||||||||||| |||| |||| ||||||||||    
T  21666093 cggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatg 21666041  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 11913134 - 11913055
Alignment:
Q  163 ggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagctcagt 242  Q
    |||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||| | |||||||  | |||||||| ||||    
T  11913134 ggactttggggtgtgcaaagagttcaatggagttgggcctctctaaggtatgaacttcaaaaaaaatattatagcacagt 11913055  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 29694084 - 29694131
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctc 203  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||    
T  29694084 cagggccgcaccttggggtgtgcaaagagctcaatggagctgggcctc 29694131  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 45156413 - 45156355
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||| |||| |||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  45156413 caggctcggcccttggggggtgcaaacagctcaatggagctgggcctccccaaggtatg 45156355  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 28425946 - 28425877
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaa 225  Q
    ||||||| ||||||||||||||||||   ||||||||| ||||||| | |||||||||| || |||||||    
T  28425946 cagggtccgaccttggggtgtgcaaaccactcaatggaactggaccaccccaaggtatgggcctcaaaaa 28425877  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 21190982 - 21190934
Alignment:
Q  166 ccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  21190982 ccttggggggtgcaaacagctcaatggagctgggcctccccaaggtatg 21190934  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 30175529 - 30175577
Alignment:
Q  166 ccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  30175529 ccttggggggtgcaaacagctcaatggagctgggcctccccaaggtatg 30175577  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 20611501 - 20611562
Alignment:
Q  153 aagcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  20611501 aagcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatg 20611562  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 4036779 - 4036870
Alignment:
Q  149 ttataagcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagctcagt 242  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||| |||||||| |||||||  |||||||||| ||||    
T  4036779 ttatgagcagggtcggaccttggggtgtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctcaaaaa--aaattatagcccagt 4036870  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 39135133 - 39135042
Alignment:
Q  151 ataagcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagctcagt 242  Q
    |||| ||||| || ||||||||||||||||||||||||||||| |||| |||| |||||||||| || |||||||  |||||||||| ||||    
T  39135133 ataatcagggccgaaccttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcctcaaaaacaaaattatagcccagt 39135042  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 5128303 - 5128255
Alignment:
Q  166 ccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||| ||| ||| |||||||||||||||| |||||||||| ||||    
T  5128303 ccttggggggtgtaaacagctcaatggagctgggcctctccaagatatg 5128255  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 22315879 - 22315787
Alignment:
Q  150 tataagcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagctcagt 242  Q
    |||| ||||| |||| |||| ||| ||||||| ||||||||||||||||||||| ||||||||||||| ||| |||  |||||||||| ||||    
T  22315879 tatatgcaggctcggcccttagggggtgcaaacagctcaatggagctggacctccccaaggtatgagcctcataaaaaaaattatagcccagt 22315787  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 22076987 - 22077030
Alignment:
Q  155 gcagggtcggaccttggggtgtgcaaagagctcaatggagctgg 198  Q
    |||||| ||||||||||||||||||||  |||||||||||||||    
T  22076987 gcagggccggaccttggggtgtgcaaaccgctcaatggagctgg 22077030  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 36363265 - 36363218
Alignment:
Q  167 cttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||||  ||||||||||||||||||||  |||||||||||||||    
T  36363265 cttggggtggacaaagagctcaatggagctgagcctctccaaggtatg 36363218  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 24404209 - 24404256
Alignment:
Q  166 ccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  24404209 ccttgggg-gtgcaaacagctcaatggagctgggcctccccaaggtatg 24404256  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 36118858 - 36118806
Alignment:
Q  162 cggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||| ||| ||||| |||||||||||||||||||   |||||||||||||||    
T  36118858 cggactttgaggtgtacaaagagctcaatggagctacgcctctccaaggtatg 36118806  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 7398159 - 7398214
Alignment:
Q  159 ggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  7398159 ggtcggaccttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatg 7398214  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 26918091 - 26918029
Alignment:
Q  154 agcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgag 216  Q
    ||||||||||||  || |||||||||||||||||||||||||||| | |||| ||||||||||    
T  26918091 agcagggtcggattttagggtgtgcaaagagctcaatggagctgggcatctctaaggtatgag 26918029  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 20152915 - 20152969
Alignment:
Q  171 gggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaa 225  Q
    |||||||||||||||||||||||||||  |||||| ||||||||| | |||||||    
T  20152915 gggtgtgcaaagagctcaatggagctgagcctctctaaggtatgaacttcaaaaa 20152969  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 27237823 - 27237776
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctc 203  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| ||||    
T  27237823 cagggccggactttggggtgtgcaaagagctcaatggagttgggcctc 27237776  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 36903681 - 36903643
Alignment:
Q  175 gtgcaaagagctcaatggagctggacctctccaaggtat 213  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  36903681 gtgcaaagagctcaattgagctgggcctctccaaggtat 36903643  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 12419893 - 12419833
Alignment:
Q  154 agcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||||| ||||||||||||| ||||| ||| |||||||| | || |||| ||||||||||    
T  12419893 agcagggccggaccttggggtctgcaaggagttcaatggaaccgggcctcaccaaggtatg 12419833  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 23858883 - 23858915
Alignment:
Q  259 ataaataaaaattccttattctctttctctctg 291  Q
    ||||| |||||||||||||||||||||||||||    
T  23858883 ataaacaaaaattccttattctctttctctctg 23858915  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 38009547 - 38009489
Alignment:
Q  157 agggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatga 215  Q
    |||| |||||||||||||||| |||||||||||||||||||  |||| |||||||||||    
T  38009547 agggccggaccttggggtgtgtaaagagctcaatggagctgagcctccccaaggtatga 38009489  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 15078456 - 15078503
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctc 203  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||    
T  15078456 cagggtcggaccttggggtacgcaaagagctcaatggagttggacctc 15078503  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 5973429 - 5973369
Alignment:
Q  154 agcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||||| | ||||||||||| ||||||  ||||||||||||||| |||| ||||||||||    
T  5973429 agcagggccagaccttggggtctgcaaaccgctcaatggagctgggcctccccaaggtatg 5973369  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 41063077 - 41063116
Alignment:
Q  159 ggtcggaccttggggtgtgcaaagagctcaatggagctgg 198  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  41063077 ggtcggaccttggggtgtgcaaaccgctcaatggagctgg 41063116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 7944832 - 7944774
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||||||||||||||||||||||||  | |||||||| |||| | || ||||||||||    
T  7944832 cagggtcggaccttggggtgtgcaaaccgttcaatggaactgggcttccccaaggtatg 7944774  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 39332640 - 39332586
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaagg 210  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||| || ||||||    
T  39332640 cagggtcggaccttgggatgtgcaaaccgctcaatggaactggacatccccaagg 39332586  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 5721437 - 5721506
Alignment:
Q  168 ttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagc 237  Q
    ||||||||||||||  |||||||||| |||| |||| |||||| ||| || |||||||  ||||||||||    
T  5721437 ttggggtgtgcaaaccgctcaatggaactgggcctccccaaggcatgggcctcaaaaaaaaaattatagc 5721506  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 25562079 - 25562042
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatgga 193  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  25562079 cagggccggaccttggggtgtgcaaggagctcaatgga 25562042  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 8645920 - 8646000
Alignment:
Q  162 cggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatagctcagt 242  Q
    ||||||||| ||||||||| |||||||||||| |||  ||||  ||| |||||||| | |||||  |||||||| ||||||    
T  8645920 cggaccttgtggtgtgcaaggagctcaatggaactgagcctcctcaaagtatgagctttaaaaaaaaaattataactcagt 8646000  T

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Target: scaffold1320 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 1052 - 1099
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctc 203  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||    
T  1052 cagggtcggaccttggggtacgcaaagagctcaatggagttggacctc 1099  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 1366898 - 1366852
Alignment:
Q  168 ttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||    
T  1366898 ttggggtgagcaaagagctcaatggagctgggcctctccaagatatg 1366852  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 24395445 - 24395503
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||| |||||||| ||| |||||||||||||||||||||| | |||| ||||||||||    
T  24395445 cagggccggaccttagggcgtgcaaagagctcaatggagctaggcctccccaaggtatg 24395503  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 4931921 - 4931860
Alignment:
Q  175 gtgcaaagagctcaatggagctggacctctccaaggtatgagcgtcaaaaaggaaattatag 236  Q
    ||||||| ||||||||||||||||||||| |||||||||| || ||| |||  |||||||||    
T  4931921 gtgcaaatagctcaatggagctggacctccccaaggtatgcgcctcataaaaaaaattatag 4931860  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 11242718 - 11242659
Alignment:
Q  155 gcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||| ||||||||| ||||||||| ||| |||||||| || | |||||||||||||||    
T  11242718 gcagggccggaccttgaggtgtgcaaggagttcaatggaacttggcctctccaaggtatg 11242659  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 15639157 - 15639215
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    ||||| || |||||| ||||||||| |||||||||||| ||||| ||| ||||||||||    
T  15639157 cagggccgtaccttgaggtgtgcaaggagctcaatggaactggagctccccaaggtatg 15639215  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 28689864 - 28689806
Alignment:
Q  156 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctctccaaggtatg 214  Q
    |||||||||| ||| ||||||||||||||||||||||| | |||| || ||||||||||    
T  28689864 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatg 28689806  T

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