View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452-Insertion-10 (Length: 301)
Name: NF4452-Insertion-10
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452-Insertion-10 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 6307768 - 6307913
Alignment:
| Q |
25 |
ttgaataggatgcttcggggattaagatcagttcctattacttctccatatacnnnnnnnnnnnnnnnnnnnnnnggccatcacttagtaacttccttga |
124 |
Q |
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| T |
6307768 |
ttgaataggatgcttcggggattaagatcagttcctattacttctccatatacttttatttatttatttttatctggccatcacttagtaacttccttga |
6307867 |
T |
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| Q |
125 |
accattccactaatacctatttagtaggaaccacgtacgattatat |
170 |
Q |
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| T |
6307868 |
accattccactaatacctatttagtaggaaccacgtacgattatat |
6307913 |
T |
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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 107776 - 107815
Alignment:
| Q |
170 |
tttcgtggaacacctagagggagcacttttcctattctat |
209 |
Q |
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| T |
107776 |
tttcgtggaacacctagaggtagcacttttcctattctat |
107815 |
T |
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