View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452-Insertion-2 (Length: 983)
Name: NF4452-Insertion-2
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 899; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 7 - 946
Target Start/End: Original strand, 46460663 - 46461604
Alignment:
| Q |
7 |
agtatcttatattgttgttttggattttgttgcaggttcgtgatgggaaacttctggtgaatggtgttgctgaagatgaggaatttgttttagagcctct |
106 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46460663 |
agtatcttatattgttgttttggattttgtcgcaggttcgtgatgggaaacttctggtgaatggtgttgctgaagatgaggaatttgttttagagcctct |
46460762 |
T |
|
| Q |
107 |
tgcttacgagttggctccaatggtaatgatatttctgtggtaatggtgctttgtttattgattgtgaatacttgggaacatgattaatagtatttgtttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46460763 |
tgcttacgagttggctccaatggtaatgatatttctgtggtaatggtgctttgtttattgattgtgaatacttgggaacatgattaatagtatttgtttt |
46460862 |
T |
|
| Q |
207 |
tgtacttttaatgtttgcaggttgttccaaaaggacatgtctttgtgatgggagacaaccgtaacaagagttttgattctcataactggtaaactttatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46460863 |
tgtacttttaatgtttgcaggttgttccaaaaggacatgtctttgtgatgggagacaaccgtaacaagagttttgattctcataactggtaaattttatg |
46460962 |
T |
|
| Q |
307 |
tcctttcttactgacttttctctgttgtttctatcggagaatggagaatatattgctttaggtgggtgatgatacgttttggcctatttgttgatgctgt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46460963 |
tcctttcttactgacttttctctgttgtttctatcgaagaatggagaatatattgctttaggtgggtgatgatacgttttggcctatttgttgatgctgt |
46461062 |
T |
|
| Q |
407 |
tctccaaactactagcttatgtaaaacatgctctcggatcttagaagttcatacttaattatatgcacttaattgtgatacctgactaacatctttgttg |
506 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461063 |
tctccaaactaccagcttatgtaaaacatgctctcggatcttagaagttcatacttaattatatgcacttaattgtgatacctgactaacatctttgttg |
46461162 |
T |
|
| Q |
507 |
tttttgtgtcattcaggggtccgcttccaatcgagaacattgtcggtaggtccatgtttcgctactggcctccatccaaagtatccgacaccgtcatggt |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461163 |
tttttgtgtcattcaggggtccgcttccaatcgagaacattgttggtaggtccatgtttcgctactggcctccatccaaagtatccgacaccgtcatggt |
46461262 |
T |
|
| Q |
607 |
tcataaatcctcacctggaaataaatctgtggcagtttcttgacgtggtttccactaccttctgagggtgaagaaagatttttgatacattcatttattc |
706 |
Q |
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| T |
46461263 |
tcataaatcctcacctggaaataaatctgtggcagtttcttgacgcggtttccactaccttctgagggtgaagaaagatttttgatacattcatttattc |
46461362 |
T |
|
| Q |
707 |
tgaatgaaccgccactccagttttggactaggagtgagctgttattcaacaattctccaggacaaatctgctggtcctgattaaagtttgggatgaacgt |
806 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461363 |
tgaatgaatcgccactccagttttggactaggagtgagctgttattcaacaattctccaggacaaatctgctggtcctgattaaagtttgggatgaacgt |
46461462 |
T |
|
| Q |
807 |
cttattcattgatgcaaatttgtcaatgacctaataataatgttctttagtgctatcctgagatgcatgacccctggcaaaagtctggggaaa--gaata |
904 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46461463 |
cttattcattgatgcaaatttgtcaatgacctaataataatgttctttagtgctatcctgagatgcatgacccctggcaaaagtctggggaaaagaaata |
46461562 |
T |
|
| Q |
905 |
tttaagaaacatgatgtatgatttgtgttgtattctttcatg |
946 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461563 |
tttaagaaacatgatgtatgatttgtgttgtattctttcatg |
46461604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 24452941 - 24453017
Alignment:
| Q |
54 |
aaacttctggtgaatggtgttgctgaagatgaggaatttgttttagagcctcttgcttacgagttggctccaatggt |
130 |
Q |
| |
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||||| || |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24452941 |
aaactactagtgaatggtgttgctgaacaagaggaatttgttttagagcctcttgattacgagttggctccaatggt |
24453017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 24453015 - 24453084
Alignment:
| Q |
226 |
ggttgttccaaaaggacatgtctttgtgatgggagacaaccgtaacaagagttttgattctcataactgg |
295 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
24453015 |
ggttgttccagcaggacatgtgtttgtaatgggagacaatcgtaaccagagttttgattctcataactgg |
24453084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 24453083 - 24453148
Alignment:
| Q |
522 |
ggggtccgcttccaatcgagaacattgtcggtaggtccatgtttcgctactggcctccatccaaag |
587 |
Q |
| |
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||||||| || || ||| |||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
24453083 |
ggggtccactcccgatcaagaacattgttggtagatcgatgtttcgctactggcctccatccaaag |
24453148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 768
Target Start/End: Original strand, 24453244 - 24453305
Alignment:
| Q |
707 |
tgaatgaaccgccactccagttttggactaggagtgagctgttattcaacaattctccagga |
768 |
Q |
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| T |
24453244 |
tgaatgaactgcaactcgggttttggactgagagtgagctgttaatcaacaattctccagga |
24453305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 1477442 - 1477514
Alignment:
| Q |
295 |
gtaaactttatgtcctttcttactgacttttctctgttgtttctatcggagaatggagaatatattgctttag |
367 |
Q |
| |
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||||| |||| ||||||||||||| ||||| |||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
1477442 |
gtaaattttaagtcctttcttactaactttactctgttgttgctattggataatggagaatatattgctttag |
1477514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 19179106 - 19179178
Alignment:
| Q |
295 |
gtaaactttatgtcctttcttactgacttttctctgttgtttctatcggagaatggagaatatattgctttag |
367 |
Q |
| |
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||||| |||| ||||||||||||| ||||| |||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
19179106 |
gtaaattttaagtcctttcttactaactttactctgttgttgctattggataatggagaatatattgctttag |
19179178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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