View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4452-Insertion-3 (Length: 922)
Name: NF4452-Insertion-3
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452-Insertion-3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 47880397 - 47879853
Alignment:
| Q |
8 |
acagtgctatacctgctatttgacaatggaaatacttactgaaacgtgtatcgcggagcaaaaatggctatttaaaattccgctatgatatagtactgct |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
47880397 |
acagtgctatacctgctatttgacaatggaaatacttactgaaacgtgtatcgcggaacaaaaatggctatttaaaattccattatgatatagcactgct |
47880298 |
T |
|
| Q |
108 |
atttgacaacactgcatcgcattcacttaggcttaggccattaagtgtgactcctgtgctgcaacatctataccagccgaaatctcaaaatccttaacgt |
207 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47880297 |
atctgacaacactgcatcgcattcacttaggcttaggccattaagtgtgactcctgtactgcaacatctataccagccaaaatctcaaaatccttaacgt |
47880198 |
T |
|
| Q |
208 |
gacggagacctcaaaccactatttaaaaccttgcttataacaactatgcattttagtaattgatggtaaacaatgaatatacataaaagactaagcactt |
307 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47880197 |
gactgagacctcaaaccactatttaaaaccttgcttataacaactatgcattttagttattgatggtaaacaatgaatatacataaaagactaagcactt |
47880098 |
T |
|
| Q |
308 |
tatttctgtcaaaaagaaaaactaggcacttcattagaaaatgttcacaccatatatagtgtaagctaggcaacaagcacatacgtaccacgttaaagga |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47880097 |
tatttctgtcaaaaagaaaaactaggcacttcattagaaaatgctcacaccatatatagtgtaagctaggcaacaagcacatacgtaccacgttaaagga |
47879998 |
T |
|
| Q |
408 |
agccaaaaacacagtatagtatagtctatctatatgcaccctaactagtagacattaaagaagttgcacattcaactctatttcattgtcaagtacttcc |
507 |
Q |
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| T |
47879997 |
agccaaaaacacagtatagtatagtctatctatatgaaccctaactagtagacattaaagaagttgcacattcaactctatttcattgtcaagtacttcc |
47879898 |
T |
|
| Q |
508 |
tcgtcgctctgatctacttccatgtcttctgcttcttcgtcagtc |
552 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47879897 |
tcgtcattctgatctacttccatgtcttctgcttcttcgtcagtc |
47879853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 585 - 920
Target Start/End: Complemental strand, 47879820 - 47879485
Alignment:
| Q |
585 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47879820 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
47879721 |
T |
|
| Q |
685 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcttttgc |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879720 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcttttgc |
47879621 |
T |
|
| Q |
785 |
ttcttccaacactccaaatggatctatgccataatcaaactcactcccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaac |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879620 |
ttcttccaacactccaaatggatctatgccataatcaaactcactcccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaac |
47879521 |
T |
|
| Q |
885 |
aaatccttcaatcttgctatgacgccatttgtatca |
920 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
47879520 |
aaatccttcaatcttgctatgacaccatttgtatca |
47879485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 779
Target Start/End: Complemental strand, 47879571 - 47879389
Alignment:
| Q |
597 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
696 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||||||| ||||||||||||| | ||||||| |||| || || ||||||||||||||| ||||| |
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|
| T |
47879571 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacaccatttgtatcaattctcatagcct |
47879472 |
T |
|
| Q |
697 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgct |
779 |
Q |
| |
|
|| ||||||| | | | || | ||||||| |||||||||| |||||| ||||||||| ||||||| || | |||||||||| |
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|
| T |
47879471 |
tgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatatgct |
47879389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 597 - 766
Target Start/End: Original strand, 47881470 - 47881639
Alignment:
| Q |
597 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
696 |
Q |
| |
|
||||||| ||| |||| ||||| || |||||||||||||||||||||| || |||||||||||| |||||| |||||||||||| ||||| |
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|
| T |
47881470 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccaccagtatcaattctcctagcct |
47881569 |
T |
|
| Q |
697 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgc |
766 |
Q |
| |
|
|| | || || | | | || | ||||||| ||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
47881570 |
tgaattctttcataacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgc |
47881639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 831 - 882
Target Start/End: Original strand, 47881467 - 47881518
Alignment:
| Q |
831 |
ccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaa |
882 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||||||||| |||||||||||| |
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|
| T |
47881467 |
ccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaa |
47881518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 13286956 - 13286806
Alignment:
| Q |
8 |
acagtgctatacctgctatttgacaatggaaatacttactgaaacgtgtatcgcggagcaaaaatggctatttaaaattccgctatgatatagtactgct |
107 |
Q |
| |
|
||||||||||| | ||||||||| ||| |||||||||| || | ||||||||| | ||| | ||||||||||||||||| ||||||||| |||| | |
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|
| T |
13286956 |
acagtgctatagccgctatttgatgatgacaatacttactaaagcatgtatcgcgaaacaatagtggctatttaaaattcccttatgatataacactgtt |
13286857 |
T |
|
| Q |
108 |
atttgacaacactgcatcgcattcacttaggcttaggccattaagtgtgac |
158 |
Q |
| |
|
| ||||||||| |||||| | ||||||||||||||||||||||| |||||| |
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|
| T |
13286856 |
aattgacaacattgcatcaccttcacttaggcttaggccattaaatgtgac |
13286806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 706
Target Start/End: Original strand, 532620 - 532720
Alignment:
| Q |
606 |
aagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagccttgcaatcct |
705 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||||||| | ||||| ||||||| ||||| || ||||||||||||| ||||||| |||||| |
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|
| T |
532620 |
aagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatcct |
532719 |
T |
|
| Q |
706 |
t |
706 |
Q |
| |
|
| |
|
|
| T |
532720 |
t |
532720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 837 - 892
Target Start/End: Original strand, 532614 - 532669
Alignment:
| Q |
837 |
ggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatcctt |
892 |
Q |
| |
|
|||| |||| |||||||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
532614 |
ggcaagaagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatcctt |
532669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 837 - 892
Target Start/End: Original strand, 565197 - 565252
Alignment:
| Q |
837 |
ggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatcctt |
892 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| | ||||||||||||||||| |||| |
|
|
| T |
565197 |
ggcaagaagatgttgaatcccaaaattaaatctgtatgccctttaaacaaaccctt |
565252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 26214656 - 26214723
Alignment:
| Q |
596 |
ctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttt |
663 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| |||| | ||||||||||||| || ||||||||||||| |
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|
| T |
26214656 |
ctttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactcttt |
26214723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 834 - 920
Target Start/End: Original strand, 26214657 - 26214743
Alignment:
| Q |
834 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatca |
920 |
Q |
| |
|
||||||| ||| |||| ||||| ||||| |||| ||||||||||||||||| ||||||| |||| ||||||| ||| ||||||| |
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|
| T |
26214657 |
tttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactctttctatgacaccagctgtatca |
26214743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 849 - 882
Target Start/End: Complemental strand, 3045718 - 3045685
Alignment:
| Q |
849 |
ttgaatcctaaaattaaatttttatgccctttaa |
882 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
3045718 |
ttgaatcctaaaattaaatatttatgccctttaa |
3045685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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