View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452-Insertion-4 (Length: 859)

Name: NF4452-Insertion-4
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452-Insertion-4
NF4452-Insertion-4
[»] chr8 (27 HSPs)
chr8 (8-452)||(22881479-22881924)
chr8 (199-346)||(19342153-19342300)
chr8 (223-346)||(19371651-19371774)
chr8 (673-788)||(41739972-41740090)
chr8 (227-346)||(12843492-12843612)
chr8 (230-346)||(20707137-20707253)
chr8 (139-346)||(18530298-18530505)
chr8 (230-346)||(25809544-25809660)
chr8 (139-344)||(15610125-15610328)
chr8 (263-346)||(15748416-15748499)
chr8 (268-346)||(10252853-10252931)
chr8 (231-344)||(18917062-18917174)
chr8 (263-346)||(15753126-15753209)
chr8 (273-315)||(23432572-23432614)
chr8 (545-606)||(1788916-1788977)
chr8 (178-346)||(10516410-10516578)
chr8 (545-606)||(17028394-17028455)
chr8 (545-606)||(17558830-17558891)
chr8 (478-530)||(21185145-21185198)
chr8 (545-606)||(21185338-21185399)
chr8 (223-307)||(18535660-18535744)
chr8 (471-515)||(21184455-21184499)
chr8 (229-308)||(17872014-17872093)
chr8 (275-322)||(27118278-27118325)
chr8 (237-322)||(12863774-12863859)
chr8 (229-345)||(28458042-28458156)
chr8 (545-606)||(39655716-39655777)
[»] chr1 (26 HSPs)
chr1 (671-857)||(9111649-9111835)
chr1 (178-346)||(11833602-11833770)
chr1 (124-346)||(22669015-22669239)
chr1 (187-346)||(20816886-20817043)
chr1 (227-341)||(36754874-36754988)
chr1 (247-346)||(17048053-17048152)
chr1 (462-531)||(9111353-9111422)
chr1 (231-347)||(12889219-12889333)
chr1 (256-338)||(34488590-34488672)
chr1 (545-649)||(38825494-38825602)
chr1 (545-630)||(9111558-9111646)
chr1 (265-347)||(16635360-16635442)
chr1 (545-640)||(12141669-12141768)
chr1 (545-647)||(43254110-43254215)
chr1 (274-346)||(5223425-5223497)
chr1 (231-330)||(34497624-34497724)
chr1 (228-347)||(1634895-1635014)
chr1 (273-315)||(15650740-15650782)
chr1 (225-346)||(24882832-24882954)
chr1 (553-640)||(1953689-1953780)
chr1 (243-315)||(12398137-12398209)
chr1 (271-322)||(10751556-10751607)
chr1 (611-686)||(21501345-21501419)
chr1 (224-283)||(25517743-25517802)
chr1 (296-346)||(13258060-13258110)
chr1 (244-313)||(19018767-19018836)
[»] scaffold0076 (1 HSPs)
scaffold0076 (545-827)||(6777-7049)
[»] chr6 (14 HSPs)
chr6 (630-778)||(4845902-4846052)
chr6 (137-345)||(14761175-14761382)
chr6 (139-341)||(9188109-9188311)
chr6 (608-666)||(3835743-3835801)
chr6 (564-654)||(14579607-14579701)
chr6 (608-666)||(19973657-19973715)
chr6 (549-640)||(19697866-19697961)
chr6 (265-307)||(19622703-19622745)
chr6 (545-606)||(6591866-6591927)
chr6 (229-344)||(13002072-13002187)
chr6 (608-654)||(19976087-19976133)
chr6 (228-322)||(30701106-30701200)
chr6 (247-312)||(10821477-10821542)
chr6 (290-346)||(33546651-33546708)
[»] chr5 (13 HSPs)
chr5 (126-344)||(11848260-11848479)
chr5 (236-346)||(24558951-24559062)
chr5 (236-346)||(24599983-24600094)
chr5 (564-655)||(13291940-13292035)
chr5 (210-307)||(18807438-18807535)
chr5 (249-315)||(24492079-24492145)
chr5 (545-606)||(18594854-18594915)
chr5 (545-602)||(26703034-26703091)
chr5 (545-602)||(26972767-26972824)
chr5 (229-285)||(16687136-16687192)
chr5 (221-333)||(17246610-17246721)
chr5 (292-347)||(16686418-16686473)
chr5 (608-673)||(16819573-16819638)
[»] chr7 (29 HSPs)
chr7 (112-346)||(39199748-39199984)
chr7 (245-347)||(1675002-1675104)
chr7 (160-346)||(39227381-39227564)
chr7 (223-346)||(5459037-5459160)
chr7 (150-346)||(19650624-19650819)
chr7 (227-331)||(23655471-23655575)
chr7 (231-346)||(7681500-7681615)
chr7 (227-346)||(32561867-32561984)
chr7 (229-322)||(23183450-23183543)
chr7 (227-346)||(23662272-23662391)
chr7 (227-346)||(32562240-32562357)
chr7 (229-346)||(3316082-3316199)
chr7 (229-346)||(6414887-6415004)
chr7 (227-346)||(4122570-4122689)
chr7 (231-330)||(7666257-7666356)
chr7 (545-640)||(15569568-15569666)
chr7 (227-346)||(7144559-7144677)
chr7 (545-640)||(11674003-11674101)
chr7 (227-346)||(11739521-11739640)
chr7 (199-309)||(10677654-10677764)
chr7 (545-640)||(39426468-39426567)
chr7 (545-666)||(13815714-13815838)
chr7 (209-308)||(5740766-5740865)
chr7 (296-347)||(23134901-23134952)
chr7 (564-654)||(15169923-15170017)
chr7 (608-656)||(2609685-2609733)
chr7 (248-346)||(21572011-21572107)
chr7 (247-308)||(1783379-1783440)
chr7 (545-640)||(31210092-31210191)
[»] chr2 (21 HSPs)
chr2 (450-531)||(21189639-21189720)
chr2 (223-347)||(24386333-24386457)
chr2 (172-346)||(35511820-35511994)
chr2 (256-343)||(16748054-16748140)
chr2 (231-346)||(31851172-31851287)
chr2 (229-347)||(18115064-18115182)
chr2 (206-308)||(26712884-26712986)
chr2 (235-315)||(22311211-22311291)
chr2 (276-333)||(29231903-29231961)
chr2 (276-333)||(29345202-29345260)
chr2 (227-308)||(21538465-21538546)
chr2 (225-322)||(27483804-27483901)
chr2 (273-312)||(8686084-8686123)
chr2 (296-346)||(34566083-34566133)
chr2 (545-606)||(2590540-2590601)
chr2 (545-640)||(21189403-21189502)
chr2 (231-308)||(22108281-22108358)
chr2 (247-322)||(24764124-24764199)
chr2 (604-666)||(27107279-27107341)
chr2 (214-267)||(17496498-17496551)
chr2 (223-308)||(25905621-25905706)
[»] chr4 (19 HSPs)
chr4 (545-704)||(895382-895543)
chr4 (229-347)||(24715644-24715762)
chr4 (184-338)||(35150106-35150260)
chr4 (112-302)||(23692855-23693046)
chr4 (112-346)||(12285759-12285994)
chr4 (275-346)||(9597328-9597399)
chr4 (223-346)||(20748625-20748748)
chr4 (241-347)||(7221256-7221361)
chr4 (229-324)||(9883016-9883111)
chr4 (545-606)||(13010550-13010611)
chr4 (223-324)||(14117123-14117224)
chr4 (141-272)||(17650941-17651072)
chr4 (604-647)||(31767527-31767570)
chr4 (223-329)||(9736421-9736527)
chr4 (292-346)||(16300679-16300733)
chr4 (545-606)||(6667736-6667797)
chr4 (224-315)||(20896781-20896869)
chr4 (238-324)||(4046171-4046257)
chr4 (208-266)||(13977055-13977113)
[»] chr3 (22 HSPs)
chr3 (450-530)||(16366227-16366307)
chr3 (229-346)||(23528341-23528457)
chr3 (16-107)||(6837518-6837609)
chr3 (225-347)||(9828931-9829049)
chr3 (602-704)||(16366443-16366540)
chr3 (229-345)||(4596832-4596948)
chr3 (564-656)||(2353182-2353278)
chr3 (244-320)||(2906505-2906581)
chr3 (604-686)||(26445173-26445255)
chr3 (229-345)||(4698579-4698695)
chr3 (229-308)||(10686948-10687027)
chr3 (229-308)||(20311361-20311440)
chr3 (545-656)||(9372229-9372343)
chr3 (229-330)||(2120116-2120217)
chr3 (208-344)||(27686119-27686254)
chr3 (256-320)||(27757269-27757333)
chr3 (271-322)||(17034125-17034176)
chr3 (273-315)||(13177515-13177557)
chr3 (273-315)||(13340415-13340457)
chr3 (241-315)||(14426897-14426971)
chr3 (608-654)||(14654861-14654907)
chr3 (273-314)||(9323992-9324033)
[»] scaffold0028 (3 HSPs)
scaffold0028 (460-531)||(110359-110430)
scaffold0028 (545-640)||(110123-110221)
scaffold0028 (545-640)||(127702-127800)
[»] scaffold0466 (1 HSPs)
scaffold0466 (231-346)||(4312-4427)
[»] scaffold0002 (2 HSPs)
scaffold0002 (564-666)||(448697-448800)
scaffold0002 (273-315)||(129431-129473)
[»] scaffold0216 (1 HSPs)
scaffold0216 (604-665)||(12090-12151)
[»] scaffold0014 (1 HSPs)
scaffold0014 (545-606)||(82661-82722)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Original strand, 22881479 - 22881924
Alignment:
Q  8 tcatcctccactatccatgttttccgctaactaccaaacttagtgcaaataacccattcgctatgaattcgttagaatatctttcactttaaatagcatc 107  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||||||||     
T  22881479 tcatcctccactacccatgttttccactaactaccaaacttagtgcaaataacccattcgctgtgaatttgttagaatatctttcccttcaaatagcatt 22881578  T
Q  108 cctcttcttcaaatcgtcttctaagtcttaa-aagtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaacc 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||    
T  22881579 cctcttcttcaaatcgtcttctaagtcttaagaagtttcctatccttttcttgagtaccataacgttttccttgtgcccagaacttgatgtatcagaacc 22881678  T
Q  207 aaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  22881679 aaaaacttgacctaatagttagaatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaa 22881778  T
Q  307 accttagagacattgttctaaaactcactttggttcaacatgttatagaatccaagacaaactaaaattgcatcatcagaagaccaatctaatcgaacta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22881779 accttagagacattgttctaaaactcactttggttcaacatgttatagaatccaagacaaactaaaattgcatcatcagaagaccaatctaattgaacta 22881878  T
Q  407 tacgcggtcccttccaatgcgcacctcaaaataaagtaccatgtgt 452  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  22881879 tacgcggtcccttccaatgcgcacctcaagataaagtaccatgtgt 22881924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 199 - 346
Target Start/End: Complemental strand, 19342300 - 19342153
Alignment:
Q  199 tcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattatta 298  Q
    |||||||||| || ||||| | | ||||||||||||||| ||||||  |||||||| ||||||||||| | ||||||||||||||||  ||||||| |||    
T  19342300 tcagaaccaacaagttgacttcagagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgtta 19342201  T
Q  299 tcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  19342200 tcatcaaaactttagagacattgttctaaaactcactttggttcaaca 19342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 19371774 - 19371651
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||||||||| | ||||  |||||||| ||||||||||| | ||||||||||||||||  ||||||| ||||||||||||| |||||||||||||    
T  19371774 agttagaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgt 19371675  T
Q  323 tctaaaactcactttggttcaaca 346  Q
    ||||||||||||||||||||||||    
T  19371674 tctaaaactcactttggttcaaca 19371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 673 - 788
Target Start/End: Original strand, 41739972 - 41740090
Alignment:
Q  673 aggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaagtgtctccccaaattgcta--aaagaaagt 769  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||  | |||||||    
T  41739972 aggaagaaaaattgagaagaaagaaagagtttttgtgttggtggaaaagtggtatttttctgatcaggaagtgtcactccaaattgctatgagagaaagt 41740071  T
Q  770 atatatttttggtatgctt 788  Q
    |||||||||||||||||||    
T  41740072 atatatttttggtatgctt 41740090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 227 - 346
Target Start/End: Original strand, 12843492 - 12843612
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||  |||||||||||||||||||||  |||||||| |||||||    
T  12843492 agaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctagagacactgttcta 12843591  T
Q  327 aaact-cactttggttcaaca 346  Q
    ||| | || ||||||||||||    
T  12843592 aaaatccattttggttcaaca 12843612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 20707137 - 20707253
Alignment:
Q  230 atttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaa 329  Q
    |||| ||||||||||| | |||||| ||||||||||||||||||| ||||||||||  | ||||| |||||||  |||||||| |||||||||| |||||    
T  20707137 atttgattatatggtcctacacacttgaacacacattagagtatctaattgttctttcaaacattgttatcatttaaaccttatagacattgttttaaaa 20707236  T
Q  330 ctcactttggttcaaca 346  Q
    |||||||||||||||||    
T  20707237 ctcactttggttcaaca 20707253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 139 - 346
Target Start/End: Original strand, 18530298 - 18530505
Alignment:
Q  139 aagtttcctatgcttttcttgagtaacataacgttttcctt-gtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaatt 237  Q
    ||||| || |||||||||||| |||  | || ||||||||| ||||| ||| ||||| |||||||||  |||| || |||||   |||||||||||||||    
T  18530298 aagttaccaatgcttttcttgtgtacaaaaatgttttcctttgtgcttagagcttgatgtatcagaattaaaa-ctcgacctttaagttagaatttaatt 18530396  T
Q  238 atatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcacttt 337  Q
    |||||||| |||| ||| || |||||||||||||| | |||| || ||  ||||||| ||||||||||||| | |||||||| || |||||||||| |||    
T  18530397 atatggtcttgcatacttgatcacacattagagtaccaaattattttttaatacattgttatcatcaaaacttaagagacatcgtcctaaaactcatttt 18530496  T
Q  338 ggttcaaca 346  Q
    | |||||||    
T  18530497 gattcaaca 18530505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 25809544 - 25809660
Alignment:
Q  230 atttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaa 329  Q
    |||||||||||| |||  ||||||| |||||||||||||||||||||||| |||||  |||| || ||| |||||||||| || ||||||||||||||||    
T  25809544 atttaattatatagtccggcacactcgaacacacattagagtatccaattattcttttatactttgttaacatcaaaaccatatagacattgttctaaaa 25809643  T
Q  330 ctcactttggttcaaca 346  Q
    | |||||||| ||||||    
T  25809644 cccactttggatcaaca 25809660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 139 - 344
Target Start/End: Original strand, 15610125 - 15610328
Alignment:
Q  139 aagtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaatta 238  Q
    |||||||| ||| |||| || |||| ||||| | |||| ||||||||| || |||| ||||||| || |||| ||||||||   ||| ||||||||||||    
T  15610125 aagtttccaatgtttttttt-agtaccataatgctttcattgtgctcataatttgatgtatcagtacgaaaa-cttgaccttgaagtcagaatttaatta 15610222  T
Q  239 tatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttg 338  Q
     |||||| |  ||| | ||| ||| ||||||||| | | ||||||||  | ||||| |||| |||||||||||| ||||||||||||||||| |||||||    
T  15610223 aatggtcctaaacatttgaatacatattagagtaacaagttgttcttacacacatttttattatcaaaaccttatagacattgttctaaaacccactttg 15610322  T
Q  339 gttcaa 344  Q
     |||||    
T  15610323 attcaa 15610328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 15748416 - 15748499
Alignment:
Q  263 cattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||||||||  |||||||||||  ||||||| ||||||| |||| ||||||||| ||||||||||| ||| ||||||||||||    
T  15748416 cattagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaaattcaatttggttcaaca 15748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 10252853 - 10252931
Alignment:
Q  268 gagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||||| |||| |||||| ||||||| |||| |||||||||||| ||||||||||||||||   ||||||||||||||    
T  10252853 gagtatctaatttttcttctatacattgttataatcaaaaccttaaagacattgttctaaaatctactttggttcaaca 10252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 18917062 - 18917174
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    ||||||| ||||||||| |||||| ||||| |||||||| |   |||||||||||| |||||||  ||||||||||| ||||||||| | ||||||||||    
T  18917062 tttaattctatggtcatccacacttgaacaaacattagaatgctcaattgttcttctatacatt-gtatcatcaaaatcttagagacttcgttctaaaac 18917160  T
Q  331 tcactttggttcaa 344  Q
     ||  |||||||||    
T  18917161 ccatcttggttcaa 18917174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 15753126 - 15753209
Alignment:
Q  263 cattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||| |||| ||||||||||||  ||||||| ||||||| |||| ||||||||| |||||||||||  || ||||||||||||    
T  15753126 cattaaagtacccaattgttcttacatacattgttatcataaaaatcttagagactttgttctaaaatccaatttggttcaaca 15753209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 23432614 - 23432572
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  23432614 tccaattgttcttcgatactttattatcatcaaaaccttagag 23432572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 1788916 - 1788977
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||||||| ||||||||    
T  1788916 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttc 1788977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 10516578 - 10516410
Alignment:
Q  178 ttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaa 277  Q
    ||||||| ||||||||| ||||||||| ||| |||||||| |    |||||||||||||| |||  |  ||||  || || |||| |||||||||   ||    
T  10516578 ttgtgctaagaacttgatgtatcagaatcaagaacttgactttgatgttagaatttaattctattatactgcattcttgagcacatattagagtacgaaa 10516479  T
Q  278 ttgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
       |||||  ||||||| |||||||||||| |||| | ||||||||||||||| |||||| ||||||||    
T  10516478 acattctttcatacattgttatcatcaaaatcttataaacattgttctaaaacccactttagttcaaca 10516410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 17028455 - 17028394
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||| | || |||| |||||||||||| |||||||    
T  17028455 tcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttc 17028394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 17558891 - 17558830
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||| | || |||| |||||||||||| |||||||    
T  17558891 tcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttc 17558830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 21185145 - 21185198
Alignment:
Q  478 tctcaaaataacaatcagcataaacatataagcattaa-aatcaataagcaaaa 530  Q
    |||| |||||| |||||||||||||||||||||||||| || ||||||||||||    
T  21185145 tctctaaataataatcagcataaacatataagcattaataaacaataagcaaaa 21185198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 21185338 - 21185399
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||| |||||| |||||    
T  21185338 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccagcatataatagttc 21185399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 18535660 - 18535744
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaa 307  Q
    |||||||||||||| |||||||| |||| | |  ||||||||||| |||||| | ||||||||  | ||||| ||||||||||||    
T  18535660 agttagaatttaatcatatggtcctgcatatttaaacacacattaaagtatcaagttgttctttcagacattgttatcatcaaaa 18535744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 21184455 - 21184499
Alignment:
Q  471 tgaatgatctcaaaataacaatcagcataaacatataagcattaa 515  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  21184455 tgaattatctctaaataataatcagcataaacatataagcattaa 21184499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 17872093 - 17872014
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||||| |||| || |||| ||| ||||||| |||||  |||| ||||||||||  ||||||| |||||||||||||    
T  17872093 aatttaattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaac 17872014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 27118325 - 27118278
Alignment:
Q  275 caattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||||| |||| || ||||||||||||||||||||| |||||    
T  27118325 caattgttcttcaatactttcttatcatcaaaaccttagagaaattgt 27118278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 12863774 - 12863859
Alignment:
Q  237 tatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||| ||||||||  |||||| ||||   |||||||||||| ||| |||| || ||||||||||||| | || ||||||||    
T  12863774 tatatggtcctgcacacttaaacacatattaacatatccaattgttgttcaatactttgttatcatcaaaacttcagtgacattgt 12863859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 28458156 - 28458042
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    |||||||||  || ||| ||||||||  ||||||||||||||||  ||||| |||||  | ||||| ||| ||||||| ||||| ||  |||||||||||    
T  28458156 aatttaattccatagtcttgcacacttaaacacacattagagta--caattattctttcacacattgttaccatcaaacccttataggtattgttctaaa 28458059  T
Q  329 actcactttggttcaac 345  Q
    |  ||||||| ||||||    
T  28458058 atccactttgattcaac 28458042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 39655716 - 39655777
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || ||||||||||||||  | |||| |||||| |||| ||||||||    
T  39655716 tcactgtccttgaggattttatccgcctcataagtgcatatcctcccatgatacaacagttc 39655777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 671 - 857
Target Start/End: Original strand, 9111649 - 9111835
Alignment:
Q  671 ccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgtctccccaaattgctaaaagaaagta 770  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||   |||||||||||    
T  9111649 ccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgt-ttcccaaattctaaaaagaaagta 9111747  T
Q  771 tatatttttggtatgcttctggtaaaaagcgtgcttcaggtcttgtccatcat-aaaagcgctatgttattatcatatatactcccaa 857  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||||||||||||||||||| ||||    
T  9111748 tatattttgggtatgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactgtgttattatcatatatacttccaa 9111835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 178 - 346
Target Start/End: Original strand, 11833602 - 11833770
Alignment:
Q  178 ttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaa 277  Q
    ||||| |||||| |||| |||||||||||||||||||||| |   ||| | |||||| ||||| || |||||||| | |||||||||||||||| || ||    
T  11833602 ttgtgttcagaatttgatgtatcagaaccaaaaacttgactttgaagtcaaaatttacttatacggccatgcacaattgaacacacattagagtttcaaa 11833701  T
Q  278 ttgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    || || ||  |||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  11833702 ttattttttcatacgttattatcattaaaactttagagacattgttttaaaactcactttggttcaaca 11833770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 124 - 346
Target Start/End: Complemental strand, 22669239 - 22669015
Alignment:
Q  124 tcttctaagtcttaa-aagtttcctatgcttttcttgagtaacataacgttttcc-ttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaa 221  Q
    ||||||||||||| | |||||| | |||||| ||||| ||| ||||| ||||||| ||||||||| || |||| |||||| |||||||||||||||||      
T  22669239 tcttctaagtcttcagaagttttcaatgcttctcttgcgtatcataatgttttccattgtgctcaaaatttgatgtatcataaccaaaaacttgaccttg 22669140  T
Q  222 tagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattg 321  Q
     ||| | ||||||||||||||||| |||||||| ||||| | ||||||||| | |||| |||||  ||||||| ||||||| ||||||||  | |||||     
T  22669139 aagtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaaaccttgaaaacatta 22669040  T
Q  322 ttctaaaactcactttggttcaaca 346  Q
    ||||||||| ||||||  |||||||    
T  22669039 ttctaaaacccactttaattcaaca 22669015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 187 - 346
Target Start/End: Complemental strand, 20817043 - 20816886
Alignment:
Q  187 gaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttc 286  Q
    |||||||| ||||||||||||||| |||||| |   | | ||||||||||| ||||||| ||||||||  ||||||||||| ||||| |||||||||||     
T  20817043 gaacttgatgtatcagaaccaaaa-cttgactttgaattcagaatttaattttatggtcctgcacacttcaacacacatta-agtattcaattgttcttt 20816946  T
Q  287 gatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
     ||||||| ||||||| ||||| ||||||||||||||||||||| |||||| ||||||||    
T  20816945 catacattgttatcattaaaacattagagacattgttctaaaacccactttagttcaaca 20816886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 36754988 - 36754874
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||| ||||| |||| || |||||||| |||||| | |||||||||||||||||||||  ||||||| ||||||||||||| ||||||| |||||||||    
T  36754988 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattgttatcatcaaaactttagagatattgttcta 36754889  T
Q  327 aaactcactttggtt 341  Q
    |||| ||||||||||    
T  36754888 aaacccactttggtt 36754874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 247 - 346
Target Start/End: Complemental strand, 17048152 - 17048053
Alignment:
Q  247 tgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||| |||||||||||| | |||||||||||| ||  ||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||    
T  17048152 tgcacacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggttcaaca 17048053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 462 - 531
Target Start/End: Original strand, 9111353 - 9111422
Alignment:
Q  462 attgacatgtgaatgatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaag 531  Q
    |||||||||||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  9111353 attgacatgtgaattatctcaaaataacaataagtataaacatataaacattaaaatcaataagcaaaag 9111422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 12889333 - 12889219
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||| || |  |||||| |||||| || |||| ||||||||||||||||||||||    
T  12889333 tttaattatatagtcttgcacacttgaacacacattagagtacccaattttttt--gatacactattataataaaaatcttagagacattgttctaaaac 12889236  T
Q  331 tcactttggttcaacat 347  Q
     || ||| |||||||||    
T  12889235 ccaatttagttcaacat 12889219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 34488590 - 34488672
Alignment:
Q  256 gaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttg 338  Q
    ||||||||||||||||||| ||||||||||  |||| ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  34488590 gaacacacattagagtatcaaattgttctttcataccttattatcatcaaaactctagatacattgttctaaaacccactttg 34488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 649
Target Start/End: Original strand, 38825494 - 38825602
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataaca----gttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||| ||| || ||||| ||||||||||| |||| ||||||||||| ||||     ||| ||| |||||||||||||| ||||| ||||||||    
T  38825494 tcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaacaagttcttctctgctatgaatcatatcaaaggtggcagaacaa 38825593  T
Q  641 attgaattt 649  Q
     ||||||||    
T  38825594 cttgaattt 38825602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 9111558 - 9111646
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatcagaggt 630  Q
    ||||||||||||||| || |||||||||||||| || ||||  |||||||||| |||||   ||| ||||||| |||||||||||||||    
T  9111558 tcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggatacaacagttcttcactgatataaatcatatcagaggt 9111646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 16635360 - 16635442
Alignment:
Q  265 ttagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaacat 347  Q
    |||||||||| ||||||||||| ||||||| ||||||| |||||||||||||   ||||||||||  ||  ||||||||||||    
T  16635360 ttagagtatcaaattgttcttctatacattgttatcataaaaaccttagagattgtgttctaaaatacatcttggttcaacat 16635442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 640
Target Start/End: Original strand, 12141669 - 12141768
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataaca---gttccctgatatgaatcatatc-agaggtgacagaacaa 640  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||||||| ||||    ||||| | ||||||||||| | ||||||||||||||||    
T  12141669 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacaattattccccgttatgaatcataactagaggtgacagaacaa 12141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 647
Target Start/End: Complemental strand, 43254215 - 43254110
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||| ||| || ||| |||||||||| || |||| ||||||||||| ||||     |||||  ||||||||||||||||||||||||||||||    
T  43254215 tcactgtccttaaggatt-tattcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatcatatcagaggtgacagaacaa 43254117  T
Q  641 attgaat 647  Q
     ||||||    
T  43254116 cttgaat 43254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 5223497 - 5223425
Alignment:
Q  274 ccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||||||||||| ||||||| || ||||||||| |||||| ||||| ||||||||||||   ||||||||||    
T  5223497 ccaattgttcttctatacattgttttcatcaaaatcttagaaacattattctaaaactcatcctggttcaaca 5223425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 34497624 - 34497724
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatc-aaaaccttagagacattgttctaaaa 329  Q
    ||||||||||||||| | | |||| ||||  || |||||||  |||||| |||||| | ||||| |||||||| ||||||||||||| ||||||||||||    
T  34497624 tttaattatatggtctttctcacttgaacttactttagagtgcccaatttttcttctagacattgttatcatcaaaaaccttagagatattgttctaaaa 34497723  T
Q  330 c 330  Q
    |    
T  34497724 c 34497724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 347
Target Start/End: Complemental strand, 1635014 - 1634895
Alignment:
Q  228 gaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaa 327  Q
    |||||||||| |||| || |||||||| ||||||| |||||  |||||||||||||    |||| ||||||||||||||||  | |||||||||| | ||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaactctggagacattgtacaaa 1634915  T
Q  328 aactcactttggttcaacat 347  Q
    | | || |||| ||||||||    
T  1634914 accccattttgattcaacat 1634895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 15650782 - 15650740
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  15650782 tccaattgttcttcaatactttattatcatcaaaaccttagag 15650740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 346
Target Start/End: Original strand, 24882832 - 24882954
Alignment:
Q  225 ttagaatttaattatatggtcatgcacactagaacacacattaga-gtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgtt 323  Q
    ||||| |||| |||||||||  | |||||| ||||| || ||| | ||||| |||| |||||| |||||||  ||||||| || ||||||| | ||||||    
T  24882832 ttagattttagttatatggttctacacacttgaacaaactttaaaagtatctaattattcttctatacattgctatcatctaagccttagaaatattgtt 24882931  T
Q  324 ctaaaactcactttggttcaaca 346  Q
    ||||||||||  |||||||||||    
T  24882932 ctaaaactcatcttggttcaaca 24882954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 640
Target Start/End: Complemental strand, 1953780 - 1953689
Alignment:
Q  553 cttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatc-agaggtgacagaacaa 640  Q
    ||||||| || |||| ||||||||| ||||||| ||||||||||| |||||   ||||||| ||||||||||| |  |||||||||||||||    
T  1953780 cttgaggattttatctgcctcataagcgaatatcctcccaggatacaacagttcttccctgttatgaatcataacgggaggtgacagaacaa 1953689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 12398137 - 12398209
Alignment:
Q  243 gtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||||||| ||||| | |||||  ||| ||||| |||||| |||| |||||||||||||||| ||||||    
T  12398137 gtcatgcacacttgaacatatattagcatattcaattattcttcaatactttattatcatcaaaactttagag 12398209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 10751556 - 10751607
Alignment:
Q  271 tatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||||||||  |||| || ||||||||||||| |||||||||||||    
T  10751556 tatccaattgttctttaatactttgttatcatcaaaactttagagacattgt 10751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 686
Target Start/End: Original strand, 21501345 - 21501419
Alignment:
Q  611 atatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatgtaatccaggaagaaatattg 686  Q
    |||| ||||||||||||| ||| ||||||| ||||||||  ||||| |||||||| ||| ||||||| ||||||||    
T  21501345 atatcaatcatatcagagatgatagaacaacttgaattttctaaacacaagagatataacccaggaa-aaatattg 21501419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 25517743 - 25517802
Alignment:
Q  224 gttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttc 283  Q
    |||||||||||||| ||| ||| |||||||| ||||||||||||   |||||||||||||    
T  25517743 gttagaatttaattctatagtcctgcacacttgaacacacattatcatatccaattgttc 25517802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 13258110 - 13258060
Alignment:
Q  296 ttatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||||||||  ||||||||||||||||||   |||||||||||||||    
T  13258110 ttatcatcaaaactctagagacattgttctaaagtccactttggttcaaca 13258060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 19018836 - 19018767
Alignment:
Q  244 tcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttag 313  Q
    ||||||||||| ||||| | |||||  ||| |||||| ||||| |||| |||||||||||||||| ||||    
T  19018836 tcatgcacacttgaacaaatattagtatattcaattgctcttcaatactttattatcatcaaaactttag 19018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 110; Significance: 6e-55; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 545 - 827
Target Start/End: Original strand, 6777 - 7049
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagtt---ccctgatatgaatcatatcagaggtgacagaacaaa 641  Q
    |||||||| |||||| || ||||||||||||||  | |||| || ||| |||| |||||||   ||||||||||||||||||||||| |||||||||||     
T  6777 tcactgtcattgaggattttatccgcctcataagtgcatatccttccatgatacaacagtttttccctgatatgaatcatatcagagatgacagaacaac 6876  T
Q  642 ttgaatttgataaacgcaagagatgtaatccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaaga 740  Q
    ||||||||||||||| || ||||||||| ||| ||||||| |             |||||||||| ||||||||||||||||||| ||||||||||||||    
T  6877 ttgaatttgataaacacaggagatgtaacccacgaagaaaaa-------------aagagtttttatgttggtggaaaagtggtatttttctgatcaaga 6963  T
Q  741 agtgtctccccaaattgct-aaaagaaagtatatatttttggtatgcttctggtaaaaagcgtgcttcaggtcttgtccatcataaaa 827  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||| |||||    
T  6964 agtgtctctccaaattgctaaaaagaaagtatata-ttttggtatgcttctggt-aaaagcgtgcttctggtattgtccatcgtaaaa 7049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 630 - 778
Target Start/End: Original strand, 4845902 - 4846052
Alignment:
Q  630 tgacagaacaaattgaatttgataaacgcaagagatgtaatccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-tt 728  Q
    ||||||||||| ||||||||||||||| |  ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||    
T  4845902 tgacagaacaacttgaatttgataaacacgggagatgtaacccaggaagaaaaattgggaagaaagaaagagcttttgtgttggtggaaaagtggtattt 4846001  T
Q  729 ttctgatcaagaagtgtctccccaaattgct-aaaagaaagtatatatttt 778  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4846002 ttctgatcaagaagtgtctccccaaattgctaaaaagaaagtatatatttt 4846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 137 - 345
Target Start/End: Original strand, 14761175 - 14761382
Alignment:
Q  137 aaaagtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaat 236  Q
    |||||||||  ||||||||||||||||  |||| | |||||||||||||||||||||| |||||  ||||||||||||||| |   ||| | |||||||     
T  14761175 aaaagtttcacatgcttttcttgagtacgataatgctttccttgtgctcagaacttgatgtatctaaaccaaaaacttgactttgaagtcaaaatttaaa 14761274  T
Q  237 tatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactt 336  Q
    || || ||| |||||||| |||||||| ||| |||| | ||||| | ||| ||||||| ||||||||||||  ||||||||||||||||||||| ||||     
T  14761275 tacatagtcttgcacacttgaacacacgttatagtaccaaattgcttttc-atacattgttatcatcaaaattttagagacattgttctaaaacccacta 14761373  T
Q  337 tggttcaac 345  Q
    |||||||||    
T  14761374 tggttcaac 14761382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 9188109 - 9188311
Alignment:
Q  139 aagtttcctatgcttttcttgagtaacataacgttttcc-ttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaatt 237  Q
    |||||||| |||||| |||||| || ||||| ||||||  || |||| |||||||||| |||| || ||||| ||||||| |   ||| | |||||||||    
T  9188109 aagtttccaatgcttctcttgaataccataatgttttctattttgcttagaacttgacatatcggagccaaatacttgactttcaagtcacaatttaatt 9188208  T
Q  238 atatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcacttt 337  Q
    |||||||||| || ||| ||| |||||||| || | | |||| ||| |  ||||||| ||||||||| | | |||||||||||||||||||| ||||| |    
T  9188209 atatggtcatacatacttgaaaacacattatagaaccaaattattccttcatacattgttatcatcata-ctttagagacattgttctaaaattcactct 9188307  T
Q  338 ggtt 341  Q
    ||||    
T  9188308 ggtt 9188311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 666
Target Start/End: Original strand, 3835743 - 3835801
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatg 666  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3835743 ctgatataaatcatatcagaggtgacagaacaacttgaatttgataaacacaagagatg 3835801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 654
Target Start/End: Complemental strand, 14579701 - 14579607
Alignment:
Q  564 tatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 654  Q
    |||||||||||||| ||||||| ||| ||||||| |||||    ||| |||| ||||||||| | |||||||||||||||| |||||||||||||    
T  14579701 tatccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgacagaacaacttgaatttgataa 14579607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 19973715 - 19973657
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatg 666  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||| || ||||||    
T  19973715 ctgatatgaatcaaatcagaggtgacagaacaactcgaatttgataaacacaggagatg 19973657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 549 - 640
Target Start/End: Original strand, 19697866 - 19697961
Alignment:
Q  549 tgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcat-atcagaggtgacagaacaa 640  Q
    ||||||||||| || |||||||||||||| || |||| ||||||||||| |||||   ||||| | |||||||||| ||| |||||||||||||||    
T  19697866 tgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataatcggaggtgacagaacaa 19697961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 19622703 - 19622745
Alignment:
Q  265 ttagagtatccaattgttcttcgatacattattatcatcaaaa 307  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  19622703 ttagagtatccaattgttcttctatacattgttatcatcaaaa 19622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 6591866 - 6591927
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||||||  ||||||||    
T  6591866 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatgcaacagttc 6591927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 344
Target Start/End: Complemental strand, 13002187 - 13002072
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||||||||||  ||||||||  |||| | | || |||| |||||| | |||  |||||||| ||||||||||    ||||||||||||||||||    
T  13002187 aatttaattatatggtgctgcacacttaaacaaaaactaaagtacccaattttccttacatacattactatcatcaaagttatagagacattgttctaaa 13002088  T
Q  329 actcactttggttcaa 344  Q
    |  |||||| ||||||    
T  13002087 atccactttagttcaa 13002072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 654
Target Start/End: Complemental strand, 19976133 - 19976087
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 654  Q
    |||||||||||||||| | |||||||||||||| | |||||||||||    
T  19976133 ctgatatgaatcatattaaaggtgacagaacaactcgaatttgataa 19976087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 30701200 - 30701106
Alignment:
Q  228 gaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||| || |||| || | ||| ||| ||| |||||  |||||||||||||||  |||| || ||||||||||||| | |||||||||||    
T  30701200 gaatttaattgtacggtcctgaagacttgaatacatattagcatatccaattgttcttttatactttgttatcatcaaaacttcagagacattgt 30701106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 10821477 - 10821542
Alignment:
Q  247 tgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaacctta 312  Q
    |||||||| ||||||| ||||   |||| ||||||||||| |||| || |||||||||||||||||    
T  10821477 tgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatcatcaaaacctta 10821542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 33546651 - 33546708
Alignment:
Q  290 acattattatcatcaaaacctta-gagacattgttctaaaactcactttggttcaaca 346  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  33546651 acattgttatcttcaaaaccttaagagacattgttttaaaactccctttagttcaaca 33546708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 8e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 126 - 344
Target Start/End: Complemental strand, 11848479 - 11848260
Alignment:
Q  126 ttctaagtcttaaa-agtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatag 224  Q
    |||||||||||||  ||||||| | ||||||||| |||| ||||| |||||||||||||||| ||| ||| |||||| | | |||||||||||||   ||    
T  11848479 ttctaagtcttaagtagtttccaacgcttttctttagtaccataaagttttccttgtgctcataacatgatgtatcaaagctaaaaacttgaccttgaag 11848380  T
Q  225 ttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttc 324  Q
    ||| | ||||||||| ||||||| | |||| |||||||||||| | || | ||||||||||  ||||| | ||||||||||||||||||||||||||||     
T  11848379 ttaaactttaattatttggtcattcgcacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagacattgttg 11848280  T
Q  325 taaaactcactttggttcaa 344  Q
    |||||| |||||||||||||    
T  11848279 taaaacccactttggttcaa 11848260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 24559062 - 24558951
Alignment:
Q  236 ttatatggtcatgcacactagaacacacattagagtatccaa-ttgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcac 334  Q
    |||||||||| ||||||||  | ||||||||| | || || | ||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||    
T  24559062 ttatatggtcctgcacactttagcacacattataataccccagttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccac 24558963  T
Q  335 tttggttcaaca 346  Q
    ||||||| ||||    
T  24558962 tttggttaaaca 24558951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 24600094 - 24599983
Alignment:
Q  236 ttatatggtcatgcacactagaacacacattagagtatccaa-ttgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcac 334  Q
    |||||||||| ||||||||  | ||||||||| | || || | ||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||    
T  24600094 ttatatggtcctgcacactttagcacacattataataccccagttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccac 24599995  T
Q  335 tttggttcaaca 346  Q
    ||||||| ||||    
T  24599994 tttggttaaaca 24599983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 564 - 655
Target Start/End: Complemental strand, 13292035 - 13291940
Alignment:
Q  564 tatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaa 655  Q
    |||||||||||||| || |||| ||||||||||| |||||    ||| ||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  13292035 tatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatatcagaggtgatagaacaactcgaatttgataaa 13291940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 18807438 - 18807535
Alignment:
Q  210 aacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaa 307  Q
    |||||||| ||| ||||||||||||||| |||| || | |||||| |||||||| ||||  |||||||||||| || ||||  || ||||||||||||    
T  18807438 aacttgacttaagagttagaatttaattttatgatccttcacacttgaacacaccttagcatatccaattgttttttgatattttgttatcatcaaaa 18807535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 24492145 - 24492079
Alignment:
Q  249 cacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||| ||||| | |||||  |||||||||||||||| |||| || ||||||||||||||||||||    
T  24492145 cacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagag 24492079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 18594915 - 18594854
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||| | || |||||||||||||| || |||||||| ||||||| ||||||||    
T  18594915 tcactgtccttgaagattttatccgcctcataagcgcatattctcacaggatacaacagttc 18594854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 26703034 - 26703091
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataaca 602  Q
    ||||||||||||||| || ||||||||||||||||| |||| |||||| |||| ||||    
T  26703034 tcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaaca 26703091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 26972767 - 26972824
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataaca 602  Q
    ||||||||||||||| || ||||||||||||||||| |||| |||||| |||| ||||    
T  26972767 tcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaaca 26972824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 16687192 - 16687136
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttctt 285  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||| |||||| |||||    
T  16687192 aatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctt 16687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 17246610 - 17246721
Alignment:
Q  221 atagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacatt 320  Q
    |||||||||||||||||  || ||| |||||||| ||||| |||| |   ||| ||||||| |||  |||  |||||||||||||||| | |||||||||    
T  17246610 atagttagaatttaattgcatagtcctgcacacttgaacaaacatcaacatattcaattgtcctttaatagtttattatcatcaaaacttcagagacatt 17246709  T
Q  321 gttctaaaactca 333  Q
    |||| ||||||||    
T  17246710 gttc-aaaactca 17246721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 16686473 - 16686418
Alignment:
Q  292 attattatcatcaaaaccttagagacattgttctaaaactcactttggttcaacat 347  Q
    ||||||||||||||||| ||| ||| |||||| ||||| ||||||| |||||||||    
T  16686473 attattatcatcaaaactttaaagatattgttttaaaattcactttagttcaacat 16686418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 673
Target Start/End: Complemental strand, 16819638 - 16819573
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatgtaatcca 673  Q
    |||||||||||||| | |||||||||| ||||| |||||| |||||||| || || |||| |||||    
T  16819638 ctgatatgaatcatgttagaggtgacaaaacaatttgaatctgataaacacatgaaatgttatcca 16819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 112 - 346
Target Start/End: Complemental strand, 39199984 - 39199748
Alignment:
Q  112 ttcttcaaatcgtcttctaagtcttaa-aagtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaa 210  Q
    ||||||||||  ||||| ||||||| | |||||| | ||| |||| || |||| ||||| | ||| |||||||||||||||||| |||||||||||||||    
T  39199984 ttcttcaaattatcttccaagtctttagaagttttcaatgtttttttt-agtaccataatgcttttcttgtgctcagaacttgatgtatcagaaccaaaa 39199886  T
Q  211 acttgacctaatagttagaatttaattatatggtcatgcacactagaacac--acattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||  |    || |||||||||||||||||||||||| |||  |||||  ||||||||||||| |||||||| |  ||||||| |||| ||||||||    
T  39199885 acttgatattgatgtcagaatttaattatatggtcatgcatacttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaac 39199786  T
Q  309 cttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||| ||| |||||||||||||||  ||||||||    
T  39199785 cttagagatattattctaaaactcacttctgttcaaca 39199748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 1675104 - 1675002
Alignment:
Q  245 catgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaa 344  Q
    |||||||||| ||||| ||| |||| |||||||||||||||| |||||||||||||||||||| |||||   |||| |||||||||||||||||||||||    
T  1675104 catgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtagcattattctaaaactcactttggttcaa 1675005  T
Q  345 cat 347  Q
    |||    
T  1675004 cat 1675002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 160 - 346
Target Start/End: Complemental strand, 39227564 - 39227381
Alignment:
Q  160 agtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaac 259  Q
    |||| ||||| |||||  ||||||||| ||||||| |||||| ||||||   ||||| || | ||||| |||||||||||||||||||| | ||| ||||    
T  39227564 agtaccataatgttttttttgtgctcaaaacttgatgtatcaaaaccaa---cttgatcttaaagttataatttaattatatggtcatgtatacttgaac 39227468  T
Q  260 acacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||| |||||||||| |  |||||||  ||| ||| ||||| ||||||||||||| ||||| ||||||||   ||||||||||||||    
T  39227467 acactttagagtatcaatctgttctttcatatattgttatcttcaaaaccttagaaacattattctaaaatcgactttggttcaaca 39227381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 5459160 - 5459037
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||||||||||| ||   |||| ||||||| | ||||||||||| ||||||| ||||   |||||||||||||||||||| ||||||| | | |    
T  5459160 agttagaatttaattatacggctctgcatactagaagaaacattagagtacccaattgctctttcgtacattattatcatcaaaacattagagaaactat 5459061  T
Q  323 tctaaaactcactttggttcaaca 346  Q
    ||||||||||||||||||||||||    
T  5459060 tctaaaactcactttggttcaaca 5459037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 150 - 346
Target Start/End: Original strand, 19650624 - 19650819
Alignment:
Q  150 gcttttcttgagtaacataacgttttcctt-gtgctcagaacttgacgtatcagaaccaaaaacttgac-ctaatagttagaatttaattatatggtcat 247  Q
    |||| ||||||||| || || ||||||||| ||| ||||| |||||  ||| ||||||||||||||||  || | |||||||||| ||||||||||||||    
T  19650624 gcttctcttgagtaccaaaatgttttcctttgtgttcagagcttgatatattagaaccaaaaacttgaatctga-agttagaattcaattatatggtcat 19650722  T
Q  248 gcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
     |||||| |||||| |||||| ||| |||||| || ||  |||||||||||||||||||  |||   ||| || |||||||||||||||| ||||||||    
T  19650723 acacacttgaacacgcattagggtacccaatttttatttcatacattattatcatcaaattctt--cgacgttattctaaaactcactttagttcaaca 19650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 23655471 - 23655575
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||||||||||| | ||||| |||||| || |||||||| |||||| |||||  ||||||  ||| ||||||||||||||||||||| |||||    
T  23655471 agaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaaccttagagacattattcta 23655570  T
Q  327 aaact 331  Q
    |||||    
T  23655571 aaact 23655575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 7681615 - 7681500
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    ||||||||||||||| | || ||| ||||| |  || ||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  7681615 tttaattatatggtcctacatacttgaacaaaattttgagtacccagttgttcttctatacattgttatcatcaaaaccttagagatattgttctaaaac 7681516  T
Q  331 tcactttggttcaaca 346  Q
     ||  |||||||||||    
T  7681515 ccatcttggttcaaca 7681500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 32561984 - 32561867
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||||||||||| | || |||  |||| ||||||||||||  |||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  32561984 agaatttaattatatggtcctacatacttaaacatacattagagtattaaattatttttc-atacat-attatcatcaaaaccttagagacattgttcta 32561887  T
Q  327 aaactcactttggttcaaca 346  Q
    |||||  | |||||||||||    
T  32561886 aaactggcgttggttcaaca 32561867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 23183450 - 23183543
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||  ||| ||||||||||||| ||| | |||||||||||    
T  23183450 aatttaattatatggtcatgcacacttgaacacacattagagtgtcaggttgttctttcataaattattatcatcagaacttaagagacattgt 23183543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 227 - 346
Target Start/End: Original strand, 23662272 - 23662391
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||| ||||| |||| || |||| |||| |||| |  |||| ||||||||||||||||  ||||||| | | ||||||||||||||||||||| |||||    
T  23662272 agaatgtaattctatgttcctgcatactacaacaaaatttagggtatccaattgttcttttatacattgtcagcatcaaaaccttagagacattattcta 23662371  T
Q  327 aaactcactttggttcaaca 346  Q
    ||||| | ||||||||||||    
T  23662372 aaacttattttggttcaaca 23662391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 32562357 - 32562240
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||||||||||  | || |||  |||| ||||||||||||  |||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  32562357 agaatttaattatatggttttacatacttaaacatacattagagtattaaattatttttc-atacat-attatcatcaaaaccttagagacattgttcta 32562260  T
Q  327 aaactcactttggttcaaca 346  Q
    |||||  | |||||||||||    
T  32562259 aaactggcgttggttcaaca 32562240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 346
Target Start/End: Original strand, 3316082 - 3316199
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||| |||||| |||| ||||  |||  ||  ||||||| ||||||||||||| ||||||| ||||||||||||| |||||||  ||||||||||    
T  3316082 aatttaattttatggttatgctcacttaaacttactatagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaa 3316181  T
Q  329 actcactttggttcaaca 346  Q
    || ||  |||||||||||    
T  3316182 acccatcttggttcaaca 3316199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 346
Target Start/End: Original strand, 6414887 - 6415004
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||||||| ||| |||||||| |||  || ||||||||| |||||| |||||  ||||||| ||||||| ||||  ||| ||||||||||||| |    
T  6414887 aatttaattatatcgtcctgcacacttgaatgcatattagagtacccaattattctttcatacattgttatcataaaaaatttaaagacattgttctata 6414986  T
Q  329 actcactttggttcaaca 346  Q
    || ||||||| |||||||    
T  6414987 acccactttgattcaaca 6415004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 4122689 - 4122570
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    |||||||| |||||||| | |||||||| |||||||| |||  |||  |||||||||||   |||||| ||||||| |||| |||||||| |||||||||    
T  4122689 agaatttagttatatggccctgcacactggaacacacgttattgtactcaattgttcttttctacattgttatcattaaaatcttagagatattgttcta 4122590  T
Q  327 aaactcactttggttcaaca 346  Q
     |||| |||||| |||||||    
T  4122589 caactaactttgattcaaca 4122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 7666356 - 7666257
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    ||||||||||||||| | || ||| ||||| |  || ||||| ||| ||||||||| ||||||| |||||||||||| |||||||| |||||||||||||    
T  7666356 tttaattatatggtcctacatacttgaacaaaattttgagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaac 7666257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 640
Target Start/End: Complemental strand, 15569666 - 15569568
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||| |||| | |||||||||||||| |  |||| ||||||||||| |||||    ||| |||||||||||||||||||||||||||||||||    
T  15569666 tcactgtcctt-agggatttatccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatcatatcagaggtgacagaacaa 15569568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 7144677 - 7144559
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||||||||||  |||| ||| |||||||||||    |||||||||||||||  ||| ||| || |||||||||| | |||| ||||||| ||    
T  7144677 agaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttctttcatatattgttctcatcaaaacttcagagtcattgtt-ta 7144579  T
Q  327 aaactcactttggttcaaca 346  Q
    ||||||| ||||||| ||||    
T  7144578 aaactcattttggtttaaca 7144559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 640
Target Start/End: Complemental strand, 11674101 - 11674003
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagt--tccctgatatgaatcat-atcagaggtgacagaacaa 640  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||||||| ||||||  | || | |||||||||| ||| |||||||||||||||    
T  11674101 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttgttcccgttatgaatcataatcggaggtgacagaacaa 11674003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 11739640 - 11739521
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttcta 326  Q
    ||||||||||| ||||||  ||||| || ||| |||  |||||||| | ||||||||||  |||  || ||||||||||||| ||||| |||||||||||    
T  11739640 agaatttaattctatggtactgcacgcttgaatacatgttagagtacctaattgttctttcatatgttgttatcatcaaaacattagaaacattgttcta 11739541  T
Q  327 aaactcactttggttcaaca 346  Q
    |||| |  ||||||||||||    
T  11739540 aaaccctttttggttcaaca 11739521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 10677654 - 10677764
Alignment:
Q  199 tcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattatta 298  Q
    |||||||||| |||||||| |   ||| | |||||||||||||||||||||||| |  ||||||| ||| |||| ||||||||||||  |||| || |||    
T  10677654 tcagaaccaataacttgactttggagtcaaaatttaattatatggtcatgcacatttaaacacaccttaaagtacccaattgttcttgcataccttgtta 10677753  T
Q  299 tcatcaaaacc 309  Q
    |||| ||||||    
T  10677754 tcataaaaacc 10677764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 640
Target Start/End: Original strand, 39426468 - 39426567
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcat-atcagaggtgacagaacaa 640  Q
    ||||||||||||||| || |||||| ||||||| ||||||| |||||| |||| |||||   ||||||| |||||||||| | | |||||||||||||||    
T  39426468 tcactgtccttgaggattttatccgtctcataagcgaatatcctcccaagataaaacagttcttccctgttatgaatcataaccggaggtgacagaacaa 39426567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 13815838 - 13815714
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||| ||| || ||| |||||||||| || ||||  |||||||||| ||||     |||||| || ||||||| ||||||||||||||||||     
T  13815838 tcactgtccttaaggatt-tattcgcctcataagcgcatatcttcccaggatacaacatgttcttccctaatgtgaatcacatcagaggtgacagaacag 13815740  T
Q  641 attgaatttgataaacgcaagagatg 666  Q
     |||||| |||||||| |||||||||    
T  13815739 cttgaatctgataaacacaagagatg 13815714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 5740766 - 5740865
Alignment:
Q  209 aaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||||| ||| ||||||||||||||| ||  ||| | |||| | |||||||||||||  |||||||||||||||  |||| || | |||||||||||    
T  5740766 aaacttgacttaagagttagaatttaattttaatgtcctacacatttgaacacacattagcatatccaattgttcttttatactttgtaatcatcaaaac 5740865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 23134952 - 23134901
Alignment:
Q  296 ttatcatcaaaaccttagagacattgttctaaaactcactttggttcaacat 347  Q
    |||||||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  23134952 ttatcatcaaaatcttagagatattgttataaaactcaccttggttcaacat 23134901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 654
Target Start/End: Complemental strand, 15170017 - 15169923
Alignment:
Q  564 tatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 654  Q
    |||| |||||||||||| |||| ||| ||||||| |||||    ||| || | ||||||||| |||||| ||||||||||| |||||||||||||    
T  15170017 tatcagcctcataaacgcatatcctcacaggatacaacaggttcttctctaacatgaatcatgtcagagatgacagaacaacttgaatttgataa 15169923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 608 - 656
Target Start/End: Original strand, 2609685 - 2609733
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaac 656  Q
    |||||||||||||||||||| |||||||||||| | ||||||| |||||    
T  2609685 ctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaac 2609733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 21572107 - 21572011
Alignment:
Q  248 gcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||||| ||||| ||||||| || ||||||||||||   ||||||| |||| ||||| || ||  |||||| |||||||||  |||||||||||||||    
T  21572107 gcacacttgaacaaacattagggtgtccaattgttctcttatacattgttattatcaagacatt--agacatcgttctaaaatccactttggttcaaca 21572011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 1783379 - 1783440
Alignment:
Q  247 tgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    |||||||| ||||||| |||| | |||||||||||||||| | || || |||||||||||||    
T  1783379 tgcacacttgaacacatattaaattatccaattgttcttcaaaactttgttatcatcaaaac 1783440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 640
Target Start/End: Original strand, 31210092 - 31210191
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcat-atcagaggtgacagaacaa 640  Q
    ||||||||||||||| || ||||||||||||||  | |||| ||||| || || |||||   ||||| | |||||||||| ||| |||||||||||||||    
T  31210092 tcactgtccttgaggattttatccgcctcataagtgcatatcctcccggggtacaacagttcttccccgttatgaatcataatcggaggtgacagaacaa 31210191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 7e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 450 - 531
Target Start/End: Complemental strand, 21189720 - 21189639
Alignment:
Q  450 tgttgtatatttattgacatgtgaatgatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaag 531  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21189720 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaag 21189639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 24386333 - 24386457
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | ||   ||||||||||  ||||||||||||||| |||||||||| || |||||    
T  24386333 agttagaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgt 24386432  T
Q  323 tctaaaactcactttggttcaacat 347  Q
    |||||||| ||||||||||||||||    
T  24386433 tctaaaacccactttggttcaacat 24386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 172 - 346
Target Start/End: Complemental strand, 35511994 - 35511820
Alignment:
Q  172 ttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagt 271  Q
    ||||| |||| |||||||||||| |||| |||||||||||||| || |   | | | |||||||| |||||||| || | ||| ||||| ||||||||||    
T  35511994 ttttcattgtcctcagaacttgatgtataagaaccaaaaacttaactttgaaatcataatttaatcatatggtcttgtatacttgaacatacattagagt 35511895  T
Q  272 atccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||| |||| |||||  ||||||  ||||||||||||| ||| | ||||||||||||||||||||||| |||||||    
T  35511894 atcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttgattcaaca 35511820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 16748140 - 16748054
Alignment:
Q  256 gaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttca 343  Q
    |||||||||||||||||| ||| |||||||  |||||||||||||||||||| |||||| ||||||||||||||| || |||||||||    
T  16748140 gaacacacattagagtattcaactgttctttcatacattattatcatcaaaatcttagaaacattgttctaaaaccca-tttggttca 16748054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 31851287 - 31851172
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    |||||||||||| ||||||||||| ||||| || ||||| |||| ||||||||||| ||||| | || ||| |||||||||||| | ||||||||| |||    
T  31851287 tttaattatatgatcatgcacacttgaacaaactttagaatatctaattgttcttctatacactgttgtcaccaaaaccttagaaatattgttctacaac 31851188  T
Q  331 tcactttggttcaaca 346  Q
    |||  |||||||||||    
T  31851187 tcatcttggttcaaca 31851172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 18115064 - 18115182
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||||||| |||||||||||| || |||||||||||||| |||||| |||||  |||| || ||||||||||||||||||| | |||||  ||||    
T  18115064 aatttaattatatagtcatgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgtgttaaa 18115163  T
Q  329 actcactttggttcaacat 347  Q
     | |||||| | |||||||    
T  18115164 ccccactttagatcaacat 18115182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 26712884 - 26712986
Alignment:
Q  206 caaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaa 305  Q
    ||||||||||| |||| | ||||||||||||||||||||||| |||||| ||||||| |||||  ||| |||||||||||  |||| ||||||| |||||    
T  26712884 caaaaacttgatctaagaattagaatttaattatatggtcatacacacttgaacacatattagcatattcaattgttcttttatactttattatgatcaa 26712983  T
Q  306 aac 308  Q
    |||    
T  26712984 aac 26712986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 22311291 - 22311211
Alignment:
Q  235 attatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||| || |||||||| ||||| | |||||  |||||||||||||||| |||| || ||||||||||||||||||||    
T  22311291 attatatgatcctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagag 22311211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 29231961 - 29231903
Alignment:
Q  276 aattgttcttcgatacattattatcatcaaaaccttagagaca-ttgttctaaaactca 333  Q
    ||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  29231961 aattgttcttctatacattgttatcatcaaaaccttagagatatttgttctaaaactca 29231903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 29345260 - 29345202
Alignment:
Q  276 aattgttcttcgatacattattatcatcaaaaccttagagaca-ttgttctaaaactca 333  Q
    ||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  29345260 aattgttcttctatacattgttatcatcaaaaccttagagatatttgttctaaaactca 29345202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 21538546 - 21538465
Alignment:
Q  227 agaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||||||||||||||| | | || | ||||||||| ||||||| | ||||||||||  ||||||| |||||||||||||    
T  21538546 agaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatcaaaac 21538465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 27483901 - 27483804
Alignment:
Q  225 ttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||   |||| ||||||||||  | || || |||| |||||||| | |||||||||||    
T  27483901 ttagaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgttatgatcaaaacttcagagacattgt 27483804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 8686084 - 8686123
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaacctta 312  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  8686084 tccaattgttcttcgatactttattatcatcaaaacctta 8686123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 34566133 - 34566083
Alignment:
Q  296 ttatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||||||| |||||||| ||||||||||||||||  |||||||||||    
T  34566133 ttatcatcaaaatcttagagatattgttctaaaactcatcttggttcaaca 34566083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 2590601 - 2590540
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || ||| |||||||||| || |||| ||||||||||| ||||||||    
T  2590601 tcactgtccttgaggattttattcgcctcataagcgcatatcctcccaggatacaacagttc 2590540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 640
Target Start/End: Complemental strand, 21189502 - 21189403
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatc-agaggtgacagaacaa 640  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||| ||||| |||||   ||||| | ||||||||||| |  |||||||||||||||    
T  21189502 tcactgtccttgaggattttatccgcctcataagcgcatatcctccccggatacaacagttattccccgttatgaatcataactggaggtgacagaacaa 21189403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 22108358 - 22108281
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    |||||||||||| ||||||||||| |||||||||||| | |||  ||||| ||||  | | |||||||||||||||||    
T  22108358 tttaattatatgatcatgcacacttgaacacacattataatataaaattgctctttcacatattattatcatcaaaac 22108281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 24764199 - 24764124
Alignment:
Q  247 tgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||| ||||| | |||||  ||||||| |||||||| |||| || |||||||||||| |||||||| |||||    
T  24764199 tgcacacttgaacaaatattagtatatccaagtgttcttcaatactttgttatcatcaaaatcttagagaaattgt 24764124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 604 - 666
Target Start/End: Complemental strand, 27107341 - 27107279
Alignment:
Q  604 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatg 666  Q
    ||||||||| | ||||| ||||||||||||||||||  |||||| |||||||| || ||||||    
T  27107341 ttccctgatgtaaatcacatcagaggtgacagaacagcttgaatctgataaacacaggagatg 27107279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 17496498 - 17496551
Alignment:
Q  214 tgacctaatagttagaatttaattatatggtcatgcacactagaacacacatta 267  Q
    |||| ||| ||||||||||||||| ||| |||||||| ||| ||||||||||||    
T  17496498 tgacttaagagttagaatttaattctatagtcatgcatacttgaacacacatta 17496551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 25905706 - 25905621
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||||||||||||||||||| |||| |   ||||||||||||   | | |||||||||||   ||| ||||||||||||||||    
T  25905706 agttagaatttaattatatggtcttgcatatctgaacacacattaacattttcaattgttctttcttacgttattatcatcaaaac 25905621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 7e-33; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 545 - 704
Target Start/End: Complemental strand, 895543 - 895382
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc---cctgatatgaatcatatcagaggtgacagaacaaa 641  Q
    ||||||||||||||| || |||||||||||||| || |||| ||||||||||| || |||||   ||| |||||||||||||||||||||| |||||||     
T  895543 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaaagttcttccctaatatgaatcatatcagaggtgatagaacaag 895444  T
Q  642 ttgaatttgataaacgcaagagatgtaatccaggaagaaatattgggaagaaagaaagagttt 704  Q
    |||||||| |||||| || |||| |||| | ||||||||| ||||||||||||||||| ||||    
T  895443 ttgaatttaataaacacaggagaagtaa-ctaggaagaaaaattgggaagaaagaaagtgttt 895382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 24715762 - 24715644
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||| ||||||| |||||| | ||||||||||||||||| ||||||||||||  ||| ||| |||||||||||| |||| |||||||| | ||||    
T  24715762 aatttaattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaa 24715663  T
Q  329 actcactttggttcaacat 347  Q
    || ||||||||||||||||    
T  24715662 acccactttggttcaacat 24715644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 35150260 - 35150106
Alignment:
Q  184 tcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttc 283  Q
    ||||| ||||| || |||||||||| |||||||| |   ||| |||||||| || ||||||  ||||| || ||||||||| || ||||  ||||||||     
T  35150260 tcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacactaaagtactcaattgtta 35150161  T
Q  284 ttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttg 338  Q
    ||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  35150160 tttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttg 35150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 302
Target Start/End: Original strand, 23692855 - 23693046
Alignment:
Q  112 ttcttcaaatcgtcttctaagtc-ttaaaagtttcctatgcttttcttgagtaacataacgttttcctt-gtgctcagaacttgacgtatcagaaccaaa 209  Q
    ||||||| ||||||||||||||| ||| |||||||| |||||| ||||||||| ||||    ||||||| ||||||||| ||||| ||||||||||| ||    
T  23692855 ttcttcatatcgtcttctaagtcattagaagtttccaatgcttctcttgagtaccatactactttcctttgtgctcagagcttgatgtatcagaacc-aa 23692953  T
Q  210 aacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcat 302  Q
    || || |  |   ||| ||||||||||||||||||| ||| | || ||||||||||||||||| ||||||||| ||  ||||||| |||||||    
T  23692954 aatttaattttgaagtcagaatttaattatatggtcttgctcgcttgaacacacattagagtacccaattgttatttcatacattgttatcat 23693046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 112 - 346
Target Start/End: Complemental strand, 12285994 - 12285759
Alignment:
Q  112 ttcttcaaatcgtcttctaagtcttaaaag-tttcctatgcttttcttgagtaacataacgttttccttg-tgctcagaacttgacgtatcagaaccaaa 209  Q
    ||||||| ||| ||||||||||||| |||| |||||  ||||| ||||||||| ||||| | |||||||  ||||| || ||||| |||||| |||||||    
T  12285994 ttcttcatatcatcttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgctcggagcttgatgtatcaaaaccaaa 12285895  T
Q  210 aacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaacc 309  Q
    |  |  |  | | ||| | |||| |||||||||||| ||  |||| ||| ||||||||||||| ||||||||||||   |||||| ||||||||||||      
T  12285894 atttaaatttga-agtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaatt 12285796  T
Q  310 ttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||| |||||||||| |||||  |||||||||||||||    
T  12285795 ttatagacattgttttaaaatccactttggttcaaca 12285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 9597328 - 9597399
Alignment:
Q  275 caattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    |||||||||||| ||||||| |||||||||||| ||||||||  |||||||||||||||  |||||||||||    
T  9597328 caattgttcttctatacattgttatcatcaaaatcttagagatgttgttctaaaactcatcttggttcaaca 9597399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 223 - 346
Target Start/End: Original strand, 20748625 - 20748748
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||| || ||| |||||| ||| |||| ||| ||| ||||  ||||||||||||||||  ||||||| ||||||||  | ||||| |||||||||    
T  20748625 agttagaatatagttacatggtcttgcgcacttgaatacaaattaatgtatccaattgttctttcatacattgttatcatcgtatccttatagacattgt 20748724  T
Q  323 tctaaaactcactttggttcaaca 346  Q
    ||||| || |||||||||| ||||    
T  20748725 tctaatacccactttggtttaaca 20748748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 7221256 - 7221361
Alignment:
Q  241 tggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaactcactttggt 340  Q
    |||||||||||||| ||||| || |||||||||||||||||| ||  ||| ||| ||||||||||||||||||| | ||| || |||||| ||  |||||    
T  7221256 tggtcatgcacacttgaacaaactttagagtatccaattgttattttata-atttttatcatcaaaaccttagaaatattattttaaaacccatcttggt 7221354  T
Q  341 tcaacat 347  Q
    |||||||    
T  7221355 tcaacat 7221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 9883111 - 9883016
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttc 324  Q
    ||||||||| ||||||  ||||||||  |||||| |||||||||| |||||||||||  ||||||| ||| ||||||||||||  ||| |||||||    
T  9883111 aatttaattttatggtagtgcacacttaaacacaaattagagtattcaattgttctttcatacatttttaccatcaaaaccttttagagattgttc 9883016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 13010550 - 13010611
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||||||||||| || |||||||||||||| || |||| |||| |||||||||||||||    
T  13010550 tcactgtccttgaggattttatccgcctcataagcgcatatcctcctaggatataacagttc 13010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 14117123 - 14117224
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||||  ||||||||||||| |  |||| || |||||||  |||| | |||| ||||||    
T  14117123 agttagaatttaattctacggtcatgcacactcgaacacatattagtatatccaattgttcattcatacgttgttatcatagaaacatcagagccattgt 14117222  T
Q  323 tc 324  Q
    ||    
T  14117223 tc 14117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 17651072 - 17650941
Alignment:
Q  141 gtttcctatgcttttcttgagtaacataacgttttccttgtgctcagaacttgacgtatcagaaccaaaaacttgacctaatagttagaatttaattata 240  Q
    |||||| |||||| ||||||||| ||||| | |||||||  |||| || ||||  ||||  ||||||||||| |||  |   ||| |||| | |||||||    
T  17651072 gtttccaatgcttctcttgagtaccataatgctttccttaagctcggatcttgttgtattcgaaccaaaaacatgattttgaagtcagaaatgaattata 17650973  T
Q  241 tggtcatgcacactagaacacacattagagta 272  Q
    ||||| |||||||| |||||||||||||||||    
T  17650972 tggtcttgcacacttgaacacacattagagta 17650941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 604 - 647
Target Start/End: Original strand, 31767527 - 31767570
Alignment:
Q  604 ttccctgatatgaatcatatcagaggtgacagaacaaattgaat 647  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  31767527 ttccctgatatgaatcacatcagaggtgacagaacaacttgaat 31767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 9736421 - 9736527
Alignment:
Q  223 agttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||| |||||| ||||||| ||  | || ||||| || ||||  || | ||||||||||  ||||||| |||||||||||||  ||||||||||||    
T  9736421 agttagaacttaattctatggtcctgaccccttgaacaaactttaggctacctaattgttctttcatacatttttatcatcaaaactgtagagacattgt 9736520  T
Q  323 tctaaaa 329  Q
    |||||||    
T  9736521 tctaaaa 9736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 16300733 - 16300679
Alignment:
Q  292 attattatcatcaaaaccttagagacattgttctaaaactcactttggttcaaca 346  Q
    ||||||||||||||||| ||| ||||||||||||||||| || ||| ||||||||    
T  16300733 attattatcatcaaaactttaaagacattgttctaaaacccattttagttcaaca 16300679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 6667736 - 6667797
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||||| ||||||| || |||||||||||||| || |||| ||||||||||| ||||||||    
T  6667736 tcactgttcttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttc 6667797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 20896869 - 20896781
Alignment:
Q  224 gttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||| |||||||| ||||||||||||| ||||  ||| | |||||  |||||||||||||||  |||| ||||||||||||||| |||||||    
T  20896869 gttaaaatttaat-atatggtcatgcatacta--acatatattagcatatccaattgttctttaatactttattatcatcaaaatcttagag 20896781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 4046257 - 4046171
Alignment:
Q  238 atatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttc 324  Q
    |||| |||||||||||| |||| ||||||||  ||| ||||||||||   |||  || |||| |||||||| |||||||||||||||    
T  4046257 atattgtcatgcacacttgaacgcacattagcatattcaattgttctatcatattttgttataatcaaaactttagagacattgttc 4046171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 13977113 - 13977055
Alignment:
Q  208 aaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacatt 266  Q
    |||||||||  ||||| || |||||||||||||||||| |||| ||| |||||||||||    
T  13977113 aaaacttgatttaatactttgaatttaattatatggtcttgcatacttgaacacacatt 13977055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 16366227 - 16366307
Alignment:
Q  450 tgttgtatatttattgacatgtgaatgatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaa 530  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16366227 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaa 16366307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 229 - 346
Target Start/End: Complemental strand, 23528457 - 23528341
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||| ||||||| |||||| | || || | |||| |||| ||||||||||||  | ||||| |||||||||||||||||||||||||||||||||    
T  23528457 aatttaattttatggtcctgcacatt-gagcaaaaattatagtacccaattgttctttcagacattgttatcatcaaaaccttagagacattgttctaaa 23528359  T
Q  329 actcactttggttcaaca 346  Q
    ||||||||||||||||||    
T  23528358 actcactttggttcaaca 23528341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 6837518 - 6837609
Alignment:
Q  16 cactatccatgttttccgctaactaccaaacttagtgcaaataacccattcgctatgaattcgttagaatatctttcactttaaatagcatc 107  Q
    ||||| |||||||||| ||| || |||||||||||||||||||| ||||||||| ||||||||||| ||||| |||| ||||||||||||||    
T  6837518 cactacccatgttttctgcttaccaccaaacttagtgcaaataatccattcgctgtgaattcgttataatatatttcgctttaaatagcatc 6837609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 9829049 - 9828931
Alignment:
Q  225 ttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttc 324  Q
    ||||||||||||||||||||| |||| ||| |||||||  ||||  |||| ||||||||||  ||||||| ||||||||||||| |||| ||||||||||    
T  9829049 ttagaatttaattatatggtc-tgcaaacttgaacaca--ttagcatatctaattgttcttttatacattgttatcatcaaaactttagggacattgttc 9828953  T
Q  325 taaaactcactttggttcaacat 347  Q
     |||||||| ||||||| |||||    
T  9828952 -aaaactcattttggttaaacat 9828931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 602 - 704
Target Start/End: Original strand, 16366443 - 16366540
Alignment:
Q  602 agttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatgtaatccaggaagaaatattgggaagaaagaaagag 701  Q
    |||||||| ||||||||||||||| |||||||||||||| | ||||   ||| || || |||||||||  |||||||||| |||||||||||||||||||    
T  16366443 agttccctaatatgaatcatatcaaaggtgacagaacaactcgaat---atatacacaggagatgtaa--caggaagaaaaattgggaagaaagaaagag 16366537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 4596948 - 4596832
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||| ||||||  |||||||  |||||||||||||||||||||| | |||||  ||| ||||| |||||  |||| ||| ||||||| |||||||    
T  4596948 aatttaattttatggttttgcacacctgaacacacattagagtatccaaatattcttttatatattatcatcatttaaactttaaagacattattctaaa 4596849  T
Q  329 actcactttggttcaac 345  Q
    || |||||| |||||||    
T  4596848 acccactttagttcaac 4596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 656
Target Start/End: Complemental strand, 2353278 - 2353182
Alignment:
Q  564 tatccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaac 656  Q
    ||||||||||||||  |  ||| ||||||||||| |||||    ||| |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  2353278 tatccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcatataagaggtgacagaacaacttgaatttgataaac 2353182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 2906505 - 2906581
Alignment:
Q  244 tcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacatt 320  Q
    |||| |||||| ||||| |  ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||    
T  2906505 tcatacacacttgaacaaattttagagtatccaattattcttctatacattgttatcatcaaaactttagagacatt 2906581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 686
Target Start/End: Original strand, 26445173 - 26445255
Alignment:
Q  604 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagatgtaatccaggaagaaatattg 686  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||| ||||| || ||||| |||  || ||| ||||||||    
T  26445173 ttccctgatatgaatcatatcagaggcgacataacaatttgaatttgctaaacacaggagatataacacaagaaaaaatattg 26445255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 4698695 - 4698579
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||| ||||||  |||||||| ||||| |||||||||||| |||||||||||  | ||| |  |||||| || || ||| ||||||| |||||||    
T  4698695 aatttaattttatggttttgcacacttgaacatacattagagtattcaattgttcttttacacaatgctatcattaatactttaaagacattattctaaa 4698596  T
Q  329 actcactttggttcaac 345  Q
    |  ||| ||||||||||    
T  4698595 atccaccttggttcaac 4698579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 10686948 - 10687027
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||||||||||||||| |||||||| |||||||||| |   |||||||| ||||||| |||| || || ||||||||||    
T  10686948 aatttaattatatggtcctgcacacttgaacacacatcaatatatccaatcgttcttccataccttgttttcatcaaaac 10687027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 20311440 - 20311361
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaac 308  Q
    ||||| ||| |||||||||||||||| ||||| | |||||  |||||||||||||||  |||| || |||||||||||||    
T  20311440 aattttattttatggtcatgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatcaaaac 20311361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 656
Target Start/End: Original strand, 9372229 - 9372343
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagtt----ccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||| ||| || ||| |||||||||| || ||||  |||||||||| ||||| |    |||||||||||||||||| |||||||||| | |||    
T  9372229 tcactgtccttaaggatt-tattcgcctcataagcgcatatcgtcccaggatacaacaggttcatccctgatatgaatcatatgagaggtgacaaagcaa 9372327  T
Q  641 attgaatttgataaac 656  Q
     || ||||||||||||    
T  9372328 cttaaatttgataaac 9372343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 2120217 - 2120116
Alignment:
Q  229 aatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaa 328  Q
    ||||||||||||| ||| | |||||| | |||  ||||||||||   |||| |||||  ||||||| ||||||| |||| |||||||||||||||| |||    
T  2120217 aatttaattatattgtctttcacacttggacatccattagagtactaaattattctttcatacattgttatcataaaaatcttagagacattgttcaaaa 2120118  T
Q  329 ac 330  Q
    ||    
T  2120117 ac 2120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 27686119 - 27686254
Alignment:
Q  208 aaaacttgacctaatagttagaatttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaa 307  Q
    |||||||||  ||| ||||||||||||||| ||||||| |||||||| |||| |||||||   |||  |||||||| |  ||||||| ||| ||||||||    
T  27686119 aaaacttgatttaagagttagaatttaattctatggtcctgcacacttgaacgcacattaacatatttaattgttcgttcatacattgttaacatcaaaa 27686218  T
Q  308 ccttagagacattgttctaaaactcactttggttcaa 344  Q
      ||| |||||| ||| ||||||  | ||||||||||    
T  27686219 ttttaaagacatcgtt-taaaacctattttggttcaa 27686254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 27757269 - 27757333
Alignment:
Q  256 gaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacatt 320  Q
    ||||| || |||||||||| ||||| ||||| ||||||| |||||||||||| |||| |||||||    
T  27757269 gaacaaactttagagtatcgaattgctcttctatacattgttatcatcaaaatcttaaagacatt 27757333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 17034176 - 17034125
Alignment:
Q  271 tatccaattgttcttcgatacattattatcatcaaaaccttagagacattgt 322  Q
    |||||||||||||||| ||||||| ||||||||||||| | |||| ||||||    
T  17034176 tatccaattgttcttcaatacattgttatcatcaaaacttcagaggcattgt 17034125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 13177557 - 13177515
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||||||||| |||| || ||||||||||||||||||||    
T  13177557 tccaattgttcttcaatacttttttatcatcaaaaccttagag 13177515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 13340457 - 13340415
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||||||||| |||| || ||||||||||||||||||||    
T  13340457 tccaattgttcttcaatactttgttatcatcaaaaccttagag 13340415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 14426971 - 14426897
Alignment:
Q  241 tggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    ||||| |||||||| ||||| | |||||  |||||||||||||||  |||| || |||||||||||| |||||||    
T  14426971 tggtcctgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaatcttagag 14426897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 654
Target Start/End: Complemental strand, 14654907 - 14654861
Alignment:
Q  608 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 654  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||||    
T  14654907 ctgacatgaatcatgtcagaggtgacagaacaacttgaagttgataa 14654861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 9323992 - 9324033
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttaga 314  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  9323992 tccaattgttcttcaatactttgttatcatcaaaaccttaga 9324033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 110430 - 110359
Alignment:
Q  460 ttattgacatgtgaatgatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaag 531  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  110430 ttattgacatgtgaattatctcaaaataaaaatcagcataaacatataagcattaaaatcaataagcaaaag 110359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 545 - 640
Target Start/End: Complemental strand, 110221 - 110123
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||||||| || ||||||||||||||||| |||| |||||| |||| |||||   ||| |||||||||||||| ||||||||||||||||||    
T  110221 tcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacagttcttcgctgatatgaatcatgtcagaggtgacagaacaa 110123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 545 - 640
Target Start/End: Complemental strand, 127800 - 127702
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatcagaggtgacagaacaa 640  Q
    ||||||||||||||| || ||||||||||| ||||| |||| |||||| |||| |||||   |||||||||||||||||| ||||||||||||||||||    
T  127800 tcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaacagttcttccctgatatgaatcatgtcagaggtgacagaacaa 127702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 4427 - 4312
Alignment:
Q  231 tttaattatatggtcatgcacactagaacacacattagagtatccaattgttcttcgatacattattatcatcaaaaccttagagacattgttctaaaac 330  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||  |||| || ||| ||||| || | || |||||||||||||||||    
T  4427 tttaattatatggtcctgcacactcgaacatacattagagtatccaattgttattttatactttgttaacatcagaatcatatagacattgttctaaaac 4328  T
Q  331 tcactttggttcaaca 346  Q
     |||||||||| ||||    
T  4327 ccactttggtttaaca 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 564 - 666
Target Start/End: Complemental strand, 448800 - 448697
Alignment:
Q  564 tatccgcctcataaacgaatattctcccaggatataaca-gttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaaga 662  Q
    |||| ||||||||| || |||| ||| | ||||| |||| ||||||| ||||||||||||||| |||||||| ||||| |||||| |||||||| || ||    
T  448800 tatctgcctcataatcgcatatcctctcgggatacaacatgttccctaatatgaatcatatcaaaggtgacaaaacaacttgaatctgataaacacagga 448701  T
Q  663 gatg 666  Q
    ||||    
T  448700 gatg 448697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 129431 - 129473
Alignment:
Q  273 tccaattgttcttcgatacattattatcatcaaaaccttagag 315  Q
    |||||||||||||| |||| || ||||||||||||||||||||    
T  129431 tccaattgttcttcaatacttttttatcatcaaaaccttagag 129473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 665
Target Start/End: Complemental strand, 12151 - 12090
Alignment:
Q  604 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacgcaagagat 665  Q
    |||||| |||||||||||||||||||||||||||||| |  ||| |||||||| || |||||    
T  12151 ttcccttatatgaatcatatcagaggtgacagaacaactccaatctgataaacacatgagat 12090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 82722 - 82661
Alignment:
Q  545 tcactgtccttgagggttatatccgcctcataaacgaatattctcccaggatataacagttc 606  Q
    ||||| ||||||||| || |||||||||||||| || |||| ||||||||||| ||||||||    
T  82722 tcactatccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttc 82661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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