View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452-Insertion-5 (Length: 741)
Name: NF4452-Insertion-5
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Original strand, 26378094 - 26378819
Alignment:
| Q |
8 |
attattagatagctctaannnnnnngatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggttgtcactgccagga |
107 |
Q |
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| T |
26378094 |
attattagatagctctaatttttttgatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggttgtcactgccagga |
26378193 |
T |
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| Q |
108 |
tgggaactgtgagagatccggtcaagcaaagcacattcattggccatctgtcgattagtagagctgtgcttcacaagcaaagagagatggtagtttaact |
207 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26378194 |
tgggaactgtgagtgatccagtcaagcaaagcacattcattggccatctgtcgatcagtagagctgtgcttcacaagcaaagagagatggtagtttaact |
26378293 |
T |
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| Q |
208 |
caacttgctgatcaattagttttaccgcatactagaaaatatgatttacagtgccttctttacgtgttatagagaaatgctgtatcgacatcacattgtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26378294 |
caacttgctgatcaattagttttaccgcatactagtaaatatgatttacagtgccttctttacgtgttatagagaaatgctgtatcgacatcacattgtt |
26378393 |
T |
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| Q |
308 |
cacagcccaataatattgaatacgcaatggctattgaatggacacaccaatatgataagtctgaagcatgttggaaggccttatgtgaggtgcgtcannn |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26378394 |
cacagcccaataatattgaatacgcaatggctattgaatggacacaccaatatgataagtctgaagcatgttggaaggccttatgtgaggtgcatca--- |
26378490 |
T |
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| Q |
408 |
nnnnnnnnnnnnnnnngccaatgatcctcttcaatcttgttagtcaaacttctttttgacttgtcttgatggtaatctattttctttacagaaacaaatg |
507 |
Q |
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| T |
26378491 |
------ttttttttttgccaatgatcctcttcaatcttgttggtcaaacttctttttgacttgtcttgatggtaatctattttctttacagaaacaaatg |
26378584 |
T |
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| Q |
508 |
aaggagatagatgatgtgaagagtaaacttagaacagacagcataatttttgaagcctcgtagctaactcattcttgatgaaagatgactatgaatttaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26378585 |
aaggagatagatgatgtgaagagtaaacttagaacagacagcataatttttgaagcctcgtagctaactcattcttgatgaaagataactatgaatttac |
26378684 |
T |
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| Q |
608 |
tatatatac-tctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatttagttgtggttccgtagatacaacgaaatcactcg |
706 |
Q |
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| T |
26378685 |
aatatatacttctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatttagttgtggttccgtagatacaacgaaaccactcg |
26378784 |
T |
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| Q |
707 |
tgtttcagctgtttgtccattttgttcaatgttag |
741 |
Q |
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| T |
26378785 |
tgtttcagctgtttgtccattttgttcaatgttag |
26378819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 67 - 399
Target Start/End: Original strand, 2046 - 2379
Alignment:
| Q |
67 |
ataatgtttgtaagtttcctgcagggttgtcactgccaggatgggaactgtgagagatccggtcaagcaaagcacattcattggccatctgtcgattagt |
166 |
Q |
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| T |
2046 |
ataatgtttgtaagtttcctgcagagttgtcactgccgagaagggaaaagtaagagagccactcaagcaaagcacactcacaggccatctgtcgattagt |
2145 |
T |
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| Q |
167 |
agagctgtgcttcacaagcaaagagagatggtagtttaactcaacttgctgatcaattagttttaccgcatactagaaaatatgatttacagtgccttct |
266 |
Q |
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| T |
2146 |
agagctgcgcttcacaagcaaagagagatggtagtctaactcaacttgcttatcaattaattttaccacataccggaaaacatgatttacaatatgttct |
2245 |
T |
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| Q |
267 |
ttac-gtgttatagagaaatgctgtatcgacatcacattgttcacagcccaataatattgaatacgcaatggctattgaatggacacaccaatatgataa |
365 |
Q |
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| T |
2246 |
tttcttttttatagagaaatgctgtatcaacatcacattgttcacagtctaatacaattgaatatgcgatggccatcgaatgggcacatcaatatgataa |
2345 |
T |
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| Q |
366 |
gtctgaagcatgttggaaggccttatgtgaggtg |
399 |
Q |
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| T |
2346 |
gtcagaagcatgttggaagtacatatgtgaggtg |
2379 |
T |
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