View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452-Insertion-7 (Length: 626)

Name: NF4452-Insertion-7
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452-Insertion-7
NF4452-Insertion-7
[»] chr4 (2 HSPs)
chr4 (14-473)||(32273016-32273470)
chr4 (573-626)||(32272863-32272916)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 32273470 - 32273016
Alignment:
Q  14 tgcttcatagatgataaccgtctattcatgtatttaaacttaagataaatgaatcggatattactccatacgatttgaaactacgatggttcctacaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32273470 tgcttcatagatgataaccgtctattcatgtatttaaacttaagataaatgaatcggatattactccatacgatttgaaactacgatggttcctacaaat 32273371  T
Q  114 acttaagatggagctccgaaatagtatcttaggctaacgaaggaagggtataaacgttagaggtctttgaagtatggacgatatcattatcatcatatag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32273370 acttaagatggagctccgaaatagtatcttaggctaacgaaggaagggtataaacgttagaggtctttgaagtatggacgatatcattatcatcatatag 32273271  T
Q  214 gtagggtctagggttgaggagagtgtctataagggcaagaccaactttgaattgtgtgcccatccatatggtaatattaattgttagggttgataatact 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  32273270 gtagggtctagggttgaggagagtgtctataagggcaagaccaactttgaattgtgtgcccatcc--------atattaattgttagggttgataatact 32273179  T
Q  314 attaattgttttatgac---nnnnnnnnngttnnnnnnntgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgc 410  Q
    |||||||||||||||||            |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32273178 attaattgttttatgacttttttttttttgttaaaaaaatgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgc 32273079  T
Q  411 atgttgcttcgagactcattcctatttccttgttccctcagaaacagaaacaagtacaacgag 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32273078 atgttgcttcgagactcattcctatttccttgttccctcagaaacagaaacaagtacaacgag 32273016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 573 - 626
Target Start/End: Complemental strand, 32272916 - 32272863
Alignment:
Q  573 aggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctacctta 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32272916 aggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctacctta 32272863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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