View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_high_13 (Length: 279)
Name: NF4452_high_13
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 48089611 - 48089752
Alignment:
| Q |
127 |
agctatagctccacatggcaccaacgtgcatccgcccctgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc |
226 |
Q |
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| T |
48089611 |
agctatagctccacatggcatcaatgtgcatccgcccttgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc |
48089710 |
T |
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| Q |
227 |
atccacaagcgtgatttcttcactaatttagcacacattctt |
268 |
Q |
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| T |
48089711 |
atccagaagtgtgattgcttcactaatttagcacacattctt |
48089752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 48089514 - 48089580
Alignment:
| Q |
26 |
gactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattat |
92 |
Q |
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| T |
48089514 |
gactcaggggaaagggaaaaggacatagttatttactgagttactgattttgtgttttattaattat |
48089580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 1692119 - 1692189
Alignment:
| Q |
23 |
cgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata |
93 |
Q |
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| T |
1692119 |
cgggattcaggggaaagggaaaaagagagagttatttaccgagtcacttcttttgtgttttatcaattata |
1692189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 33003060 - 33002993
Alignment:
| Q |
26 |
gactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata |
93 |
Q |
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| T |
33003060 |
gactcaagggaaagggaaaaggagagagttatttactgagtcacttcttttgtgttttatcaattata |
33002993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 1692212 - 1692258
Alignment:
| Q |
120 |
catgtggagctatagctccacatggcaccaacgtgcatccgcccctg |
166 |
Q |
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| T |
1692212 |
catgcggagctttagctccacatagcaccaatgtgcatccgcccctg |
1692258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 18076077 - 18076151
Alignment:
| Q |
20 |
gcgcgggactcagggaaaagggaaaaa-gacagagttatttactgagttactgattttgtgttttattaattata |
93 |
Q |
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| T |
18076077 |
gcgcaggactccgggaaaagggaaaaaagagagagttatttaccgagttacttcttttgtgttttatcaattata |
18076151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 4377846 - 4377893
Alignment:
| Q |
120 |
catgtggagctatagctccacatggcaccaacgtgcatccgcccctga |
167 |
Q |
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| T |
4377846 |
catgtggagctatagctccacattgccccaacatggatccgcccctga |
4377893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 10780723 - 10780678
Alignment:
| Q |
122 |
tgtggagctatagctccacatggcaccaacgtgcatccgcccctga |
167 |
Q |
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| T |
10780723 |
tgtggagctatagctccacattgccccaacatggatccgcccctga |
10780678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 7728683 - 7728627
Alignment:
| Q |
37 |
aagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata |
93 |
Q |
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|||||||||||| ||||||||||| ||||| ||| |||| |||||||| ||||||| |
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| T |
7728683 |
aagggaaaaagagagagttatttaatgagtcacttcttttctgttttatcaattata |
7728627 |
T |
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