View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_high_18 (Length: 249)
Name: NF4452_high_18
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_18 |
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| [»] scaffold1211 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26378099 - 26377877
Alignment:
| Q |
18 |
aataatcacagatgtttcatttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgaatatggtttgcattattcagcacttc |
117 |
Q |
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| T |
26378099 |
aataatcacagatgtttcatttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgcatacggtttgcattattcagcacttc |
26378000 |
T |
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| Q |
118 |
ccctatcatcaaccataaaatgtttcaaggctccacacttggtgcaaaatatttgtttctgttatttattttgttaaccaaattgtgaagaaatataaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26377999 |
ccctatcatcaaccataaaatgtttcaaggctccacacttggtgcaaaatatttgtttctgttatttattttgttaaccaaattgtgaagaaatataaac |
26377900 |
T |
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| Q |
218 |
tgaagttactcaaccattcttct |
240 |
Q |
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| T |
26377899 |
tgaagttactcaaccattcttct |
26377877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 1695 - 1592
Alignment:
| Q |
38 |
ttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgaatatggtttgcattattcagcacttcccctatcatcaaccataaaa |
137 |
Q |
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| T |
1695 |
ttctttccatttcaatagcagatggtacatgactacatgctaaaggcagaacccatatgatttgcattattcaataattctcctatcatcaactatcaaa |
1596 |
T |
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| Q |
138 |
tgtt |
141 |
Q |
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|||| |
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| T |
1595 |
tgtt |
1592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 1558 - 1517
Alignment:
| Q |
192 |
taaccaaattgtgaagaaatataaactgaagttactcaacca |
233 |
Q |
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| T |
1558 |
taaccaaattgtgaagaaatataaactgaagttactcgacca |
1517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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